Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B05
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    29   2.6  
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    28   3.4  
04_04_0425 - 25121344-25121603,25121696-25121838,25122144-251223...    28   4.5  
12_01_0891 - 8629832-8629999,8630158-8630346,8630664-8630972,863...    27   5.9  
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154...    27   7.8  

>03_02_0222 +
           6540095-6540099,6541215-6541339,6541440-6541766,
           6541815-6543215,6543268-6543357,6543800-6544515,
           6545549-6545707,6545877-6546186,6546794-6546861,
           6547354-6547896
          Length = 1247

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 289 RACRRIPRRKNSLSFESIQFFISSYELKCWS 381
           R+   +P + +S + E   F ++S+EL+CWS
Sbjct: 223 RSLAWLPSKASSKAAERTFFLLTSHELQCWS 253


>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 385 RPCAIQRNRCKSDGESEHLESTAAGVKFP 471
           R C   R+RC++D  SE   +TA G+  P
Sbjct: 169 RRCRTGRHRCRADPSSESPPATADGIYVP 197


>04_04_0425 -
           25121344-25121603,25121696-25121838,25122144-25122348,
           25122453-25122590,25122999-25123185,25123519-25123852,
           25123930-25124018,25124088-25124231,25124514-25124603
          Length = 529

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 101 YFLVNVFIVITYSSV*MIFMLIILGLQICSRRFFNLMLFYYKPITY 238
           Y+ + + I++ +S V     L+ LG    +  FF L +F ++P  +
Sbjct: 473 YYTIPLVILVLHSPVISNVKLLALGFLYAAVDFFTLAMFLFRPFQW 518


>12_01_0891 -
           8629832-8629999,8630158-8630346,8630664-8630972,
           8631023-8631229
          Length = 290

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 LHTS*SAGQPGRVPFSEIGVNQTE 427
           LH + S  QPG+VP  EI  N +E
Sbjct: 222 LHVTASESQPGQVPMGEIQYNLSE 245


>01_07_0179 -
           41814886-41815074,41815172-41815222,41815365-41815469,
           41815852-41815945,41816056-41816150,41816581-41816700,
           41816737-41816832,41817272-41817569,41817777-41817853,
           41818932-41819447
          Length = 546

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 463 LPQPPYSPDVLTLRLIYTYFAEWHTAWLT 377
           LP+P Y+  VL +   Y  F + H AW+T
Sbjct: 176 LPEPEYTSAVLGMARSYVIFCQKH-AWMT 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,686,288
Number of Sequences: 37544
Number of extensions: 212163
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)