Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B05
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical ...    38   0.004
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    37   0.007
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    34   0.046
AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical...    32   0.19 
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   9.2  
U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF026215-2|AAB71324.2|  533|Caenorhabditis elegans Udp-glucurono...    27   9.2  

>AC006747-1|AAF60509.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39A3A.1 protein.
          Length = 311

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = -1

Query: 428 SPSDLHLFR*MAHGLADQHFSSYEEMKNWID----SKDKEFFRRGI 303
           +P+D HLFR + + LA Q F   + ++ W+D    SK +EF+  GI
Sbjct: 246 APTDYHLFRSLQNHLAGQKFHDRKAVETWLDDFFASKSQEFYAEGI 291



 Score = 35.5 bits (78), Expect = 0.020
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -2

Query: 469 EILPQPPYSPDVLTLRLIYTYFAEWHTAWLTSTSARMKK*KIGS--TRKIKNFFAAGFAC 296
           E+LP PPYSPD+           + H A       +  +  +      K + F+A G A 
Sbjct: 234 EVLPHPPYSPDLAPTDYHLFRSLQNHLAGQKFHDRKAVETWLDDFFASKSQEFYAEGIAQ 293

Query: 295 MPETWAKVVANDGHY 251
           +P  W +V+  +G Y
Sbjct: 294 LPLRWQEVIDTNGEY 308


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -2

Query: 472 WEILPQPPYSPDVL-TLRLIYTYFAEWHTAWLTSTSARMK-K*KIGSTRKIKNFFAAGFA 299
           W +LP PPYSPD+  T   ++   +++           +K +     + +  +FF+ G  
Sbjct: 261 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 320

Query: 298 CMPETWAKVVANDGHY 251
            +P  W +VV  +G Y
Sbjct: 321 MLPSKWQQVVDTNGEY 336


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 34.3 bits (75), Expect = 0.046
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 472 WEILPQPPYSPDVL-TLRLIYTYFAEWHTAWLTSTSARMK-K*KIGSTRKIKNFFAAGFA 299
           W +LP PPYSPD+  T   ++   +++           +K +     + +  +FF+ G  
Sbjct: 236 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 295

Query: 298 CMPETWAKVVANDG 257
            +P  W +VV  +G
Sbjct: 296 MLPSKWQQVVDTNG 309


>AC006769-12|AAF60591.1|  384|Caenorhabditis elegans Hypothetical
           protein Y45G12C.13 protein.
          Length = 384

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 472 WEILPQPPYSPDVL-TLRLIYTYFAEWHTAWLTSTSARMK-K*KIGSTRKIKNFFAAGFA 299
           W +LP PPYSPD+  T   ++   +++           +K +     + +  +FF+ G  
Sbjct: 261 WTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIM 320

Query: 298 CMPETWAKVV 269
            +P  W +VV
Sbjct: 321 MLPSKWQQVV 330


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = -2

Query: 430  TLRLIYTYFAEWHTAWLTSTSARMKK*KIGSTRKIKNFFAAGFACMPETWAKVVANDGHY 251
            TLRL+  Y   ++  W T+   R ++   G    +K  F      M E   ++V  + H 
Sbjct: 1279 TLRLVMPYLRRYYENWDTAKQMRSQRENFGPLHIVKLVFQK-LGSMAEEGVEIV-YEQHL 1336

Query: 250  FDTYVRNRFVVKKHQIKKTA 191
             D +   ++      ++ TA
Sbjct: 1337 CDLFYNCKYFFAGDFLRNTA 1356


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = -2

Query: 430  TLRLIYTYFAEWHTAWLTSTSARMKK*KIGSTRKIKNFFAAGFACMPETWAKVVANDGHY 251
            TLRL+  Y   ++  W T+   R ++   G    +K  F      M E   ++V  + H 
Sbjct: 1277 TLRLVMPYLRRYYENWDTAKQMRSQRENFGPLHIVKLVFQK-LGSMAEEGVEIV-YEQHL 1334

Query: 250  FDTYVRNRFVVKKHQIKKTA 191
             D +   ++      ++ TA
Sbjct: 1335 CDLFYNCKYFFAGDFLRNTA 1354


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 439 DVLTLRL-IYTYFAEWHTAWLTSTSARMKK*KIGSTRKIKNFFAAGFACMPETWAKVVAN 263
           D+L  R+ +   F + HT +L          KI    +I+ F+   F    E W     N
Sbjct: 332 DMLIKRIRLLDCFDKSHTDFLLPLLQLAGNDKISEVYEIEKFYVEQFIPALENWTNYREN 391

Query: 262 DGHYFDT 242
              +FDT
Sbjct: 392 PTEFFDT 398


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = -2

Query: 430  TLRLIYTYFAEWHTAWLTSTSARMKK*KIGSTRKIKNFFAAGFACMPETWAKVVANDGHY 251
            TLRL+  Y   ++  W T+   R ++   G    +K  F      M E   ++V  + H 
Sbjct: 1277 TLRLVMPYLRRYYENWDTAKQMRSQRENFGPLHIVKLVFQK-LGSMAEEGVEIV-YEQHL 1334

Query: 250  FDTYVRNRFVVKKHQIKKTA 191
             D +   ++      ++ TA
Sbjct: 1335 CDLFYNCKYFFAGDFLRNTA 1354


>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 218 YYKPITYISVKVMPI-VSYHFGPCLGHAGESRGEKILYLSSRSNFSFL 358
           Y  P  YI     P  +S  F  C    GES   K+L + SR  + F+
Sbjct: 18  YLIPNVYIYFSRTPCQISALFMVCSSPRGESSNPKVLNVKSRKRYRFI 65


>AF026215-2|AAB71324.2|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein36 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 101 YFLVNVFIVITYSSV*MIFMLIILGLQICSRRFFNLMLFYYK 226
           YFL+++  +I  + +  +F+L  LG  + S+  FNL L   K
Sbjct: 490 YFLIDLTAIILSTVILFLFVLFKLGKLMYSKLPFNLSLVKQK 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,517,464
Number of Sequences: 27780
Number of extensions: 199947
Number of successful extensions: 515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)