Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B03
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 30 0.19
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 27 1.3
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 27 2.3
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 5.4
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.2
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 25 7.2
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 9.5
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 380 LPLFRQPSLPKGALAPRTRRVTLPSGQPLVAGLPHREDLPLFAVCSRPS 234
LP PSLP GA A + P PL AG+P LP A P+
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 30.3 bits (65), Expect = 0.19
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 406 DVNPMPTLFCHSF-ANLRSPKELL-PLAHVVSLSHQDSPSWLVFPIE 272
D P +FC A L K+ + + H ++ SH DS ++ VFPIE
Sbjct: 183 DQQPCTEVFCEVHDAELNDGKDCVHAIPHGLTYSHTDSSTYKVFPIE 229
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 400 SHLEMYLDNNCQKMTILKTYDRVAYVIMVYISEGQHFNAILYLTY 534
SHLE + T + YDR Y++ V +S G F L Y
Sbjct: 233 SHLERVMKLLIGDFTFQEAYDRSGYILNVTVSCGSLFEMPSLLNY 277
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 281 PHREDLPLFAVCSRP 237
PH+EDL L +CS+P
Sbjct: 265 PHKEDLTLVEMCSKP 279
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 424 YLSTSLDVNPMPT-LFCHSFANLRSPKELLPLAHVVSLSHQDSPSW 290
YL T + +PT + CH L + +++ + +++L + PSW
Sbjct: 195 YLDTEHKRDSLPTAVLCHLLLRLSTYQQISIIKRLITLIDKAIPSW 240
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 146 PDRCPTPPADALSTSTNPSTLVQGLSFMKMMDGNRRQTEE 265
P P PP + + + N +LVQ +K D N + +
Sbjct: 614 PKVSPKPPTEGVDSEVNGESLVQVNKVLKSEDDNTSEASK 653
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 329 TRRVTLPSGQPLVAGLPHREDLPLFAVCSR 240
T TL PL AGLP DLP + + SR
Sbjct: 1300 TSFATLVKLVPLEAGLPDPPDLPQYLLDSR 1329
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 414 VLR*QLSKNDNSQNIRQGCVCYHGIYLRGPA 506
VL + N+NS+N R+ +C H + G A
Sbjct: 181 VLEGLVGANENSENNREALICSHCFHHNGLA 211
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 433 QKMTILKTYDRVAYVIMVYISEGQ 504
++ TIL + +RV Y+IMV + G+
Sbjct: 322 KEATILNSAERVPYLIMVEVLSGE 345
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 433 DNCYLSTSLDVNPMPTLFCHSFANLRSPKELL 338
D LS +DVNP+ L S AN+ E+L
Sbjct: 714 DRIDLSAYMDVNPISVLHTQSIANVAVLFEVL 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,292
Number of Sequences: 5004
Number of extensions: 51343
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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