Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_B03
(537 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537385-1|CAD97627.1| 942|Homo sapiens hypothetical protein pr... 31 3.4
BC033612-1|AAH33612.1| 677|Homo sapiens NCOA7 protein protein. 31 3.4
BC009399-1|AAH09399.1| 329|Homo sapiens NCOA7 protein protein. 31 3.4
AL834442-1|CAD39102.1| 861|Homo sapiens hypothetical protein pr... 31 3.4
AL832628-1|CAD89948.1| 796|Homo sapiens hypothetical protein pr... 31 3.4
AL136163-9|CAI42386.1| 942|Homo sapiens estrogen nuclear recept... 31 3.4
AL136163-1|CAI42378.1| 440|Homo sapiens estrogen nuclear recept... 31 3.4
AL078594-6|CAI20072.1| 942|Homo sapiens estrogen nuclear recept... 31 3.4
AL035689-10|CAI42397.1| 942|Homo sapiens estrogen nuclear recep... 31 3.4
AF493978-1|AAM27392.1| 942|Homo sapiens 140 kDa estrogen recept... 31 3.4
AF231022-1|AAF61928.1| 4349|Homo sapiens protocadherin Fat 2 pro... 30 4.5
AB074156-1|BAE45731.1| 533|Homo sapiens putative protein produc... 30 4.5
BC035918-1|AAH35918.1| 436|Homo sapiens potassium inwardly-rect... 29 7.9
AF181988-1|AAF97619.1| 436|Homo sapiens inwardly rectifying pot... 29 7.9
AF081466-1|AAD51376.1| 436|Homo sapiens inward rectifier potass... 29 7.9
>BX537385-1|CAD97627.1| 942|Homo sapiens hypothetical protein
protein.
Length = 942
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 565 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 619
>BC033612-1|AAH33612.1| 677|Homo sapiens NCOA7 protein protein.
Length = 677
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 300 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 354
>BC009399-1|AAH09399.1| 329|Homo sapiens NCOA7 protein protein.
Length = 329
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 242 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 296
>AL834442-1|CAD39102.1| 861|Homo sapiens hypothetical protein
protein.
Length = 861
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 484 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 538
>AL832628-1|CAD89948.1| 796|Homo sapiens hypothetical protein
protein.
Length = 796
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 554 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 608
>AL136163-9|CAI42386.1| 942|Homo sapiens estrogen nuclear receptor
coactivator 1 protein.
Length = 942
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 565 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 619
>AL136163-1|CAI42378.1| 440|Homo sapiens estrogen nuclear receptor
coactivator 1 protein.
Length = 440
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 363 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 417
>AL078594-6|CAI20072.1| 942|Homo sapiens estrogen nuclear receptor
coactivator 1 protein.
Length = 942
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 565 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 619
>AL035689-10|CAI42397.1| 942|Homo sapiens estrogen nuclear receptor
coactivator 1 protein.
Length = 942
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 565 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 619
>AF493978-1|AAM27392.1| 942|Homo sapiens 140 kDa estrogen receptor
associated protein protein.
Length = 942
Score = 30.7 bits (66), Expect = 3.4
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN+CQ
Sbjct: 565 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQ 619
>AF231022-1|AAF61928.1| 4349|Homo sapiens protocadherin Fat 2 protein.
Length = 4349
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 409 LDVNPMPTLFCHSFANLRSPKELLPLA 329
LDVN P +F H N+R P+ L P++
Sbjct: 1233 LDVNDNPPIFSHKLFNVRLPERLSPVS 1259
>AB074156-1|BAE45731.1| 533|Homo sapiens putative protein product
of Nbla00052 protein.
Length = 533
Score = 30.3 bits (65), Expect = 4.5
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 271 SRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHLEMYLDNNCQ 435
S+ G P T G + P+ ++ IK ALDS LE LDN CQ
Sbjct: 450 SQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNGCQ 504
>BC035918-1|AAH35918.1| 436|Homo sapiens potassium
inwardly-rectifying channel, subfamily J, member 14
protein.
Length = 436
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 376 HSFANLRSPKELLPLAHVVSLSHQDSPSWLVFPIEKTFLCLPSVPVHHLHKRQPLYQ 206
H A L P+ + P + L HQD ++ FL P VH + PLY+
Sbjct: 231 HVRAQLLQPR-VTPEGEYIPLDHQDVDVGFDGGTDRIFLVSPITIVHEIDSASPLYE 286
>AF181988-1|AAF97619.1| 436|Homo sapiens inwardly rectifying
potassium channel Kir2.4 protein.
Length = 436
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 376 HSFANLRSPKELLPLAHVVSLSHQDSPSWLVFPIEKTFLCLPSVPVHHLHKRQPLYQ 206
H A L P+ + P + L HQD ++ FL P VH + PLY+
Sbjct: 231 HVRAQLLQPR-VTPEGEYIPLDHQDVDVGFDGGTDRIFLVSPITIVHEIDSASPLYE 286
>AF081466-1|AAD51376.1| 436|Homo sapiens inward rectifier potassium
channel protein.
Length = 436
Score = 29.5 bits (63), Expect = 7.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 376 HSFANLRSPKELLPLAHVVSLSHQDSPSWLVFPIEKTFLCLPSVPVHHLHKRQPLYQ 206
H A L P+ + P + L HQD ++ FL P VH + PLY+
Sbjct: 231 HVRAQLLQPR-VTPEGEYIPLDHQDVDVGFDGGTDRIFLVSPITIVHEIDSASPLYE 286
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,710,882
Number of Sequences: 237096
Number of extensions: 1894198
Number of successful extensions: 11878
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11878
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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