Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_B03
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50071-6|CAL64000.2|  372|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50071-5|CAH04718.2|  396|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
           protein F02E9.4b protein.
          Length = 1507

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 258 VCRLFPSIIFIKDNPCTNVDGFVDVD 181
           VC L PS  F+KD   T+  G V++D
Sbjct: 798 VCTLGPSYRFMKDTKATDCSGRVELD 823


>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
           protein F02E9.4a protein.
          Length = 1505

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 258 VCRLFPSIIFIKDNPCTNVDGFVDVD 181
           VC L PS  F+KD   T+  G V++D
Sbjct: 798 VCTLGPSYRFMKDTKATDCSGRVELD 823


>Z50071-7|CAA90405.3|  356|Caenorhabditis elegans Hypothetical
           protein T07D4.2a protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 159 GQRSGKPQILESIFYIVNAEWHIF-RIHHFY 70
           GQR G  ++L ++F  V  ++H+F  IH  Y
Sbjct: 270 GQRMGCAELLNTVFKRVRPKYHVFGHIHEGY 300


>Z50071-6|CAL64000.2|  372|Caenorhabditis elegans Hypothetical
           protein T07D4.2c protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 159 GQRSGKPQILESIFYIVNAEWHIF-RIHHFY 70
           GQR G  ++L ++F  V  ++H+F  IH  Y
Sbjct: 286 GQRMGCAELLNTVFKRVRPKYHVFGHIHEGY 316


>Z50071-5|CAH04718.2|  396|Caenorhabditis elegans Hypothetical
           protein T07D4.2b protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 159 GQRSGKPQILESIFYIVNAEWHIF-RIHHFY 70
           GQR G  ++L ++F  V  ++H+F  IH  Y
Sbjct: 310 GQRMGCAELLNTVFKRVRPKYHVFGHIHEGY 340


>Z81534-4|CAB04345.1|  277|Caenorhabditis elegans Hypothetical
           protein F37H8.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 436 FDNCYLSTSLDVNPMPTLFC 377
           F+ C++ +  D +P+PTL C
Sbjct: 141 FEGCFIDSMQDQSPLPTLSC 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,473,826
Number of Sequences: 27780
Number of extensions: 297296
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)