Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A23
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 RSKQTHQLCLWIKYLY 458
           RS QTH++  W+K ++
Sbjct: 334 RSPQTHKMAPWVKRVF 349


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 411 RSKQTHQLCLWIKYLY 458
           RS QTH++  W+K ++
Sbjct: 334 RSPQTHKMAPWVKRVF 349


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 439 CGSNIYTTGEDVQIQEDSEYPE 504
           C     TT EDV+  E  E+PE
Sbjct: 43  CIGETKTTIEDVEATEYGEFPE 64


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 294  FSSCEENDYGCWRCYGP 344
            F S  E  Y C+ CY P
Sbjct: 1058 FDSDRERLYDCYVCYSP 1074


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 411 RSKQTHQLCLWIKYLYYRR 467
           R   TH++  W++ ++ RR
Sbjct: 325 RKPSTHKMAPWVRKIFIRR 343


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 255 RLKPSTVTYECDMFSSCE 308
           R+ P T  YEC+   +C+
Sbjct: 464 RVPPGTPIYECNKRCNCD 481


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 288 DMFSSCEENDYGC 326
           ++ SSC  ND GC
Sbjct: 916 ELLSSCVSNDGGC 928


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 490 CPPVSEHPLL*YRYLIHRH 434
           C P   +P++ Y + I RH
Sbjct: 233 CCPNDTYPMIVYEFSISRH 251


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 411 RSKQTHQLCLWIKYLY 458
           RS QTH +  W++ ++
Sbjct: 330 RSPQTHVMAPWVRRVF 345


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 408 NRSKQTHQLCLWIKYLY 458
           +R+  TH++  W+K ++
Sbjct: 320 HRNADTHEMSEWVKVVF 336


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 408 FYWHLFFLDSPDFS 367
           FY+H F+   PD +
Sbjct: 189 FYFHQFYKQQPDLN 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,882
Number of Sequences: 438
Number of extensions: 2595
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)