Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_A21
(392 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14992-1|AAB60338.1| 243|Homo sapiens ribosomal protein S3 prot... 188 8e-48
U14991-1|AAB60337.1| 243|Homo sapiens ribosomal protein S3 prot... 188 8e-48
U14990-1|AAB60336.1| 243|Homo sapiens ribosomal protein S3 prot... 188 8e-48
BC100284-1|AAI00285.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
BC071917-1|AAH71917.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
BC071669-1|AAH71669.1| 117|Homo sapiens RPS3 protein protein. 188 8e-48
BC034149-1|AAH34149.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
BC003137-1|AAH03137.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
AY791291-1|AAV40835.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
AB061838-1|BAB79476.1| 243|Homo sapiens ribosomal protein S3 pr... 188 8e-48
S42658-1|AAB19349.2| 243|Homo sapiens S3 ribosomal protein prot... 186 2e-47
AK223048-1|BAD96768.1| 243|Homo sapiens ribosomal protein S3 va... 186 2e-47
X55715-1|CAA39248.1| 243|Homo sapiens protein ( Human Hums3 mRN... 186 3e-47
BC013196-1|AAH13196.1| 242|Homo sapiens Unknown (protein for IM... 186 3e-47
BC003577-1|AAH03577.1| 242|Homo sapiens Unknown (protein for IM... 186 3e-47
L16016-1|AAA18095.1| 95|Homo sapiens ribosomal protein S3 prot... 169 4e-42
BC150501-1|AAI50502.1| 133|Homo sapiens Unknown (protein for IM... 79 4e-15
AF281313-1|AAF82383.1| 158|Homo sapiens ribosomal protein S3 pr... 43 4e-04
X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein. 32 0.77
X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for ... 32 0.77
X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for ... 32 0.77
U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream bi... 32 0.77
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 32 0.77
BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein. 32 0.77
BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding transc... 32 0.77
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 32 0.77
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 32 0.77
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 32 0.77
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 32 0.77
AK074975-1|BAC11326.1| 562|Homo sapiens protein ( Homo sapiens ... 29 7.2
AK027654-1|BAB55269.1| 574|Homo sapiens protein ( Homo sapiens ... 29 7.2
AK027501-1|BAB55158.1| 699|Homo sapiens protein ( Homo sapiens ... 29 7.2
AK027471-1|BAB55136.1| 562|Homo sapiens protein ( Homo sapiens ... 29 7.2
AK027439-1|BAB55111.1| 507|Homo sapiens protein ( Homo sapiens ... 29 7.2
AF279656-1|AAG29378.1| 1030|Homo sapiens semaphorin SEMA6A1 prot... 29 7.2
AB037789-1|BAA92606.1| 1049|Homo sapiens KIAA1368 protein protein. 29 7.2
M12140-2|AAA88027.1| 564|Homo sapiens envelope protein protein. 28 9.5
BC109256-1|AAI09257.1| 453|Homo sapiens ZMYND17 protein protein. 28 9.5
BC109255-1|AAI09256.1| 453|Homo sapiens ZMYND17 protein protein. 28 9.5
BC094693-1|AAH94693.1| 460|Homo sapiens zinc finger, MYND-type ... 28 9.5
AL353731-8|CAI52491.1| 460|Homo sapiens zinc finger, MYND-type ... 28 9.5
>U14992-1|AAB60338.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>U14991-1|AAB60337.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>U14990-1|AAB60336.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>BC100284-1|AAI00285.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>BC071917-1|AAH71917.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>BC071669-1|AAH71669.1| 117|Homo sapiens RPS3 protein protein.
Length = 117
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
>BC034149-1|AAH34149.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>BC003137-1|AAH03137.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>AY791291-1|AAV40835.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>AB061838-1|BAB79476.1| 243|Homo sapiens ribosomal protein S3
protein.
Length = 243
Score = 188 bits (457), Expect = 8e-48
Identities = 93/105 (88%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>S42658-1|AAB19349.2| 243|Homo sapiens S3 ribosomal protein
protein.
Length = 243
Score = 186 bits (454), Expect = 2e-47
Identities = 92/105 (87%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISK+RKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>AK223048-1|BAD96768.1| 243|Homo sapiens ribosomal protein S3
variant protein.
Length = 243
Score = 186 bits (453), Expect = 2e-47
Identities = 92/105 (87%), Positives = 98/105 (93%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAE+VATRGLCAIAQAESL
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>X55715-1|CAA39248.1| 243|Homo sapiens protein ( Human Hums3 mRNA
for 40S ribosomal protein s3. ).
Length = 243
Score = 186 bits (452), Expect = 3e-47
Identities = 92/105 (87%), Positives = 97/105 (92%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
EKGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAE L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAECL 105
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 107 YKLLGGLAVRRACYGVLR 124
>BC013196-1|AAH13196.1| 242|Homo sapiens Unknown (protein for
IMAGE:4347401) protein.
Length = 242
Score = 186 bits (452), Expect = 3e-47
Identities = 92/104 (88%), Positives = 97/104 (93%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
A ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGE
Sbjct: 1 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 60
Query: 203 KGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
KGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 104
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 106 YKLLGGLAVRRACYGVLR 123
>BC003577-1|AAH03577.1| 242|Homo sapiens Unknown (protein for
IMAGE:3544292) protein.
Length = 242
Score = 186 bits (452), Expect = 3e-47
Identities = 92/104 (88%), Positives = 97/104 (93%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
A ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGE
Sbjct: 1 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGE 60
Query: 203 KGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
KGRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 61 KGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 104
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 106 YKLLGGLAVRRACYGVLR 123
>L16016-1|AAA18095.1| 95|Homo sapiens ribosomal protein S3
protein.
Length = 95
Score = 169 bits (410), Expect = 4e-42
Identities = 83/95 (87%), Positives = 88/95 (92%)
Frame = +2
Query: 20 MATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 199
MA ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 200 EKGRRIRELTSVVQKRFHIPEQSVELYAEKVATRG 304
EKGRRIRELT+VVQKRF PE SVELYAEKVATRG
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG 95
>BC150501-1|AAI50502.1| 133|Homo sapiens Unknown (protein for
IMAGE:40134452) protein.
Length = 133
Score = 79.4 bits (187), Expect = 4e-15
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +2
Query: 203 KGRRIRELTSVVQKRFHIPEQSVELYAEKVATRGLCAIAQAESL 334
+GRRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESL
Sbjct: 6 QGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESL 49
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 51 YKLLGGLAVRRACYGVLR 68
>AF281313-1|AAF82383.1| 158|Homo sapiens ribosomal protein S3
protein.
Length = 158
Score = 42.7 bits (96), Expect = 4e-04
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 275 LYAEKVATRGLCAIAQAESL 334
LYAEKVATRGLCAIAQAESL
Sbjct: 1 LYAEKVATRGLCAIAQAESL 20
Score = 37.1 bits (82), Expect = 0.021
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 339 YQLIGGLAVRRACHGVLR 392
Y+L+GGLAVRRAC+GVLR
Sbjct: 22 YKLLGGLAVRRACYGVLR 39
>X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein.
Length = 727
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 517 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 573
Query: 203 KGRRIRELTSVVQKRFHI 256
+ ++L QK++ +
Sbjct: 574 QKEHYKKLAEEQQKQYKV 591
>X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 554 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 610
Query: 203 KGRRIRELTSVVQKRFHI 256
+ ++L QK++ +
Sbjct: 611 QKEHYKKLAEEQQKQYKV 628
>X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 554 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 610
Query: 203 KGRRIRELTSVVQKRFHI 256
+ ++L QK++ +
Sbjct: 611 QKEHYKKLAEEQQKQYKV 628
>U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream
binding transcription factor protein.
Length = 654
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 396 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 452
Query: 203 KGRRIRELTSVVQKRFHI 256
+ ++L QK++ +
Sbjct: 453 QKEHYKKLAEEQQKQYKV 470
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
>BC113120-1|AAI13121.1| 589|Homo sapiens HDLBP protein protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 278 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 334
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 335 QSDIIAITGLAA 346
>BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 727
Score = 31.9 bits (69), Expect = 0.77
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +2
Query: 23 ATNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 202
ATN SKK KF G+ K +N + ++ +++ S E+ P++ ++ + +R Q +
Sbjct: 517 ATNSSKKMKFQGEPK-KPPMNGY--QKFSQELLSNGELNHLPLKERMVEIGSRWQRISQS 573
Query: 203 KGRRIRELTSVVQKRFHI 256
+ ++L QK++ +
Sbjct: 574 QKEHYKKLAEEQQKQYKV 591
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 587 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 643
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 644 QSDIIAITGLAA 655
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 640 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 696
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 697 QSDIIAITGLAA 708
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 31.9 bits (69), Expect = 0.77
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 98 RELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFHIPEQSVEL 277
+E E +E V P+ E+ + + V+G+KG IR++ + H+P + EL
Sbjct: 957 KEKCEAAKEALEALV-PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVP--APEL 1013
Query: 278 YAEKVATRGLCA 313
++ +A GL A
Sbjct: 1014 QSDIIAITGLAA 1025
>AK074975-1|BAC11326.1| 562|Homo sapiens protein ( Homo sapiens
cDNA FLJ90494 fis, clone NT2RP3003614, highly similar to
Semaphorin 6A precursor. ).
Length = 562
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 344 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 382
>AK027654-1|BAB55269.1| 574|Homo sapiens protein ( Homo sapiens
cDNA FLJ14748 fis, clone NT2RP3002869, highly similar to
Mus musculus semaphorin VIa mRNA. ).
Length = 574
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 356 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 394
>AK027501-1|BAB55158.1| 699|Homo sapiens protein ( Homo sapiens
cDNA FLJ14595 fis, clone NT2RM4002194, highly similar to
Mus musculus semaphorin VIa mRNA. ).
Length = 699
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 481 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 519
>AK027471-1|BAB55136.1| 562|Homo sapiens protein ( Homo sapiens
cDNA FLJ14565 fis, clone NT2RM4000233, highly similar to
Mus musculus semaphorin VIa mRNA. ).
Length = 562
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 344 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 382
>AK027439-1|BAB55111.1| 507|Homo sapiens protein ( Homo sapiens
cDNA FLJ14533 fis, clone NT2RM2000407, moderately
similar to Mus musculus semaphorin VIa mRNA. ).
Length = 507
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 289 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 327
>AF279656-1|AAG29378.1| 1030|Homo sapiens semaphorin SEMA6A1
protein.
Length = 1030
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 812 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 850
>AB037789-1|BAA92606.1| 1049|Homo sapiens KIAA1368 protein protein.
Length = 1049
Score = 28.7 bits (61), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 293 LPSLRIAPLTAQGYEIASAQQMSAHEFYDLSLQARSASL 177
+PS+ + P+T QGY+ Q E ++L+ ++A+L
Sbjct: 831 IPSVVVLPITQQGYQHEYVDQPKMSEVAQMALEDQAATL 869
>M12140-2|AAA88027.1| 564|Homo sapiens envelope protein protein.
Length = 564
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 194 LGEKGRRIRELTSVVQKRFHIPEQS 268
L ++G+ I+E+T+ +QK HIP Q+
Sbjct: 537 LDDEGKVIKEITAKIQKLAHIPVQT 561
>BC109256-1|AAI09257.1| 453|Homo sapiens ZMYND17 protein protein.
Length = 453
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 PYVQKSLLWPQGRRACLERKV--VEFVS*HLLCRSDFISLSSQWSYTQRR*QPAGSALSL 320
P QKS WP RR C E ++ V+ + LL DF+ S W + Q S S+
Sbjct: 128 PECQKSD-WPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWPPEAVQDWDSWFSM 186
Query: 321 R-LNLSA 338
+ L+L A
Sbjct: 187 KGLHLDA 193
>BC109255-1|AAI09256.1| 453|Homo sapiens ZMYND17 protein protein.
Length = 453
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 PYVQKSLLWPQGRRACLERKV--VEFVS*HLLCRSDFISLSSQWSYTQRR*QPAGSALSL 320
P QKS WP RR C E ++ V+ + LL DF+ S W + Q S S+
Sbjct: 128 PECQKSD-WPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWPPEAVQDWDSWFSM 186
Query: 321 R-LNLSA 338
+ L+L A
Sbjct: 187 KGLHLDA 193
>BC094693-1|AAH94693.1| 460|Homo sapiens zinc finger, MYND-type
containing 17 protein.
Length = 460
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 PYVQKSLLWPQGRRACLERKV--VEFVS*HLLCRSDFISLSSQWSYTQRR*QPAGSALSL 320
P QKS WP RR C E ++ V+ + LL DF+ S W + Q S S+
Sbjct: 135 PECQKSD-WPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWPPEAVQDWDSWFSM 193
Query: 321 R-LNLSA 338
+ L+L A
Sbjct: 194 KGLHLDA 200
>AL353731-8|CAI52491.1| 460|Homo sapiens zinc finger, MYND-type
containing 17 protein.
Length = 460
Score = 28.3 bits (60), Expect = 9.5
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 147 PYVQKSLLWPQGRRACLERKV--VEFVS*HLLCRSDFISLSSQWSYTQRR*QPAGSALSL 320
P QKS WP RR C E ++ V+ + LL DF+ S W + Q S S+
Sbjct: 135 PECQKSD-WPAHRRVCQELRLVAVDRLMEWLLVTGDFVLPSGPWPWPPEAVQDWDSWFSM 193
Query: 321 R-LNLSA 338
+ L+L A
Sbjct: 194 KGLHLDA 200
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,138,908
Number of Sequences: 237096
Number of extensions: 1008444
Number of successful extensions: 1971
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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