Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A21
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   8.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 165 LLWPQGRRACLERKVVEFVS*HLLCRSDFISLSSQWSY 278
           LL P+  +A    + VEF++ HL     +I     W Y
Sbjct: 439 LLSPEASKAT---EAVEFIAEHLRNEDLYIQTREDWKY 473


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 121 LRCGGACHTHTFRNHY 168
           LR GG  H H  + HY
Sbjct: 13  LRNGGVEHPHQHQQHY 28


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 228 VSSRILRPFSPSTLCVLVA 172
           +   +++ F+PSTL V+++
Sbjct: 199 IGHHLIQTFAPSTLVVMLS 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,180
Number of Sequences: 438
Number of extensions: 1711
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)