Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A20
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   0.76 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   3.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   5.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 0.76
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 106 GKDTFRIDPVPH 141
           G D FRID VPH
Sbjct: 223 GIDGFRIDAVPH 234


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 161 DEVLLSLAEQFGNFINSW 214
           DEV+    +   N INSW
Sbjct: 139 DEVVFRQTKAIANKINSW 156


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   EAIAVLIDELKNEDVQLR 58
           EA+  + + L+NED+ ++
Sbjct: 449 EAVEFIAEHLRNEDLYIQ 466


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 122 ELIPFLTDTIYDEDEVLLSLAEQFGNFI 205
           +L+  L+ TI     + LS   QFGN+I
Sbjct: 465 DLLKELSKTINFTYSLALSPDGQFGNYI 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,262
Number of Sequences: 438
Number of extensions: 1220
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)