Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A16
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   1.6  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   3.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 94  AWGSFTTTSPTLTWVVLTMVAAAFVS 17
           +W SF+ +SP + W+  T +++A +S
Sbjct: 195 SWLSFSKSSPVVLWLTFTRISSAGLS 220


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 33  ATIVNTTHVKVGDVVVKEPHAEVVSGAVDLHPIKGVHKGMRVRNRAHHHR 182
           A+ V     +V D   +  H+E+     D +  KGVH  MR  + A  HR
Sbjct: 376 ASSVQGNEDEVPDTASETEHSEIEDFHFDPYSEKGVHIAMRYFDAALTHR 425


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -2

Query: 166 LFLTLIPLCTPLIGWRSTAPDTTSAWGSFTTTSPTLTWVVLTMVAAAFVSCI 11
           LFL  I L  P I   S + + TSA+ SF      L W V+      F+ CI
Sbjct: 803 LFLVGIVLSIPKINGISISNNETSAYLSF------LLWSVVAFSVFRFIGCI 848


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 301 PGRRPTEPSEWPGGRSTRGASRYNIKPTTA 390
           PG R   P+   G +ST   SRYN +PT +
Sbjct: 509 PGSRNLFPTSNSGNQSTSSFSRYN-QPTVS 537


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 126 PIKGVHKGMRVRNRAHHHRSA 188
           PI+ +HKG   RNR  + R A
Sbjct: 5   PIRTLHKGKAARNRTPYDRIA 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,462
Number of Sequences: 5004
Number of extensions: 20843
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)