Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A15
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 242 LYLFLSGQRGVASIVVSFSSTLLI*PGTA*STACS 138
           LY+      GV S++ +F +  L+ PG     AC+
Sbjct: 282 LYVLSWTPYGVMSMIGAFGNKALLTPGVTMIPACT 316


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 305 CLLRMSRPGKKITKKTILG 323


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 394 CLLHWSVAGKKIVAEARLG 450
           CLL  S  GKKI  +  LG
Sbjct: 373 CLLRMSRPGKKITKKTILG 391


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +1

Query: 217 RCPDKNKYNTPKYRLIVRLSNKDVTCQVAYSRMR*SHVCAATLMNSHAMVSGG 375
           +C D+   + P   + V  + + +        M+ +HVC  +L+   A  S G
Sbjct: 355 KCEDERVISIPDKEITVPSNEETIDINNGAELMQETHVCFFSLLRD-AFTSKG 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,490
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)