Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A13
         (190 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    40   6e-05
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    34   0.002
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   3.0  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    23   4.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    23   5.3  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    23   7.0  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    23   7.0  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    23   7.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    22   9.3  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 39.5 bits (88), Expect = 6e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +1

Query: 34  AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
           AQ +Q+RAIR+ M ++I    +S  +RE+V KLIP
Sbjct: 156 AQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIP 190


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 34.3 bits (75), Expect = 0.002
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 34  AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
           AQ +Q+RAI + M ++I        ++E+V KLIP
Sbjct: 156 AQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIP 190


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 156 SLAMESRNQLVHDFT 112
           +L  E +NQLVHDF+
Sbjct: 14  TLVAEMQNQLVHDFS 28


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 184 VDTVTRLFDILSDGVKESACSRLHEALNWSHR 89
           VD   R  +   +G+  S  SR HE   WS +
Sbjct: 128 VDVAERRVEEAQNGLVRSILSRYHEEQVWSDK 159


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 117 SREQADSLTPSLRISKRRVTV 179
           ++E+  SL PSLRIS   + V
Sbjct: 683 AKERLISLVPSLRISSENIIV 703


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 187 WVDTVTRLFDILSDGVKESACSRLHEALNWSHR 89
           W   V R+F   +D  + S+      A+ W +R
Sbjct: 656 WKKEVRRIFQYYTDRTQGSSIEEKRCAMTWHYR 688


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 81  DFTHVFPDCADLGMLSGSM 25
           D  H F DC D     GS+
Sbjct: 135 DLNHAFDDCKDFDNADGSV 153


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 30  YRSAYPSPRNQEKH 71
           Y  AYP  RNQE H
Sbjct: 273 YYFAYPKDRNQECH 286


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 175 VTRLFDILSDGVKESACSRL 116
           V +LFD  SD VKE    R+
Sbjct: 786 VQKLFDYCSDPVKEMMLERI 805


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,689
Number of Sequences: 5004
Number of extensions: 10070
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)