Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_A13
(190 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X87373-1|CAA60827.1| 264|Homo sapiens ribosomal protein S3a pro... 53 2e-07
M84711-1|AAA58487.1| 264|Homo sapiens v-fos transformation effe... 53 2e-07
M77234-1|AAA60290.1| 264|Homo sapiens ribosomal protein S3a pro... 53 2e-07
L13802-1|AAA35682.1| 264|Homo sapiens ribosmal protein small su... 53 2e-07
BC071916-1|AAH71916.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC070211-1|AAH70211.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC066926-1|AAH66926.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC030161-1|AAH30161.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC019072-1|AAH19072.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC017123-1|AAH17123.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC009404-1|AAH09404.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC009219-1|AAH09219.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC006298-1|AAH06298.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC004981-1|AAH04981.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC001708-1|AAH01708.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
BC000204-1|AAH00204.1| 264|Homo sapiens ribosomal protein S3A p... 53 2e-07
>X87373-1|CAA60827.1| 264|Homo sapiens ribosomal protein S3a
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>M84711-1|AAA58487.1| 264|Homo sapiens v-fos transformation
effector protein protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>M77234-1|AAA60290.1| 264|Homo sapiens ribosomal protein S3a
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>L13802-1|AAA35682.1| 264|Homo sapiens ribosmal protein small
subunit protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC071916-1|AAH71916.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC070211-1|AAH70211.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC066926-1|AAH66926.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC030161-1|AAH30161.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC019072-1|AAH19072.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC017123-1|AAH17123.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC009404-1|AAH09404.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC009219-1|AAH09219.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC006298-1|AAH06298.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC004981-1|AAH04981.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC001708-1|AAH01708.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
>BC000204-1|AAH00204.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +1
Query: 34 AQHTQVRAIRKNMCEIITRDVTSSELREVVNKLIP 138
AQH QVR IRK M EI+TR+V +++L+EVVNKLIP
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIP 190
Score = 33.9 bits (74), Expect = 0.093
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 140 DSIAKDIEKACHGIYPL 190
DSI KDIEKAC IYPL
Sbjct: 191 DSIGKDIEKACQSIYPL 207
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,363,529
Number of Sequences: 237096
Number of extensions: 331311
Number of successful extensions: 619
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 76,859,062
effective HSP length: 42
effective length of database: 66,901,030
effective search space used: 1338020600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -