Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A12
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.010
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.4  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   3.3  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   4.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   7.7  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 182 LILTAATCWLFWLCAYMAQMNPLIGP 259
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 436 ISTLLCLIIYLFIRNDRFITWTYYTKEVSLLFGQVLHLGPVHW 308
           + TLL L I    R   F  W +      L++   LHL P HW
Sbjct: 265 LQTLLVLGIREIGRGLTFKGWLFSGMAFRLVYDMGLHLDPDHW 307


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 379 TWTYYTKEVSLLFGQ 335
           TWTYY K++ ++ G+
Sbjct: 86  TWTYYVKKIRIILGR 100


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 215 WLCAYMAQMNPLIGPRLDNETLIWISRTW 301
           W   Y+ +  P+IG   D+++L ++ + W
Sbjct: 519 WFDIYVKEYIPVIGNTKDHQSLTFLQKRW 547


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -2

Query: 199 CCS*YQYHLDNPSVRSLRSEERTYYSYDSPKHGEIVMGTNEKPILTYFLDVFYNYTISNK 20
           C S Y     +    SL S++ +  S D    G + +GTN  P++        ++TI ++
Sbjct: 47  CSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHWTIRHE 106


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 353 VSSLWTSFTPWSCSLGCPKCVRSR*ESHCQVWVR*VGSSAPCKRTARITNMLLQ 192
           VS +  +  P   S GC K +R+   S    ++  + +S      A+ITN LL+
Sbjct: 164 VSEIILATNPLLESFGCAKTLRNNNSSRHGKYLEMIFNSGGVPVGAKITNYLLE 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,047
Number of Sequences: 5004
Number of extensions: 45888
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)