Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_A08
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 126 1e-30
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 122 1e-29
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 92 2e-20
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 31 0.046
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 0.75
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 1.7
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 2.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 2.3
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 25 2.3
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 25 3.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 3.0
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 4.0
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 4.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 4.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 5.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 5.3
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 24 5.3
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 24 7.0
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 24 7.0
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 23 9.2
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 23 9.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 23 9.2
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 126 bits (303), Expect = 1e-30
Identities = 52/95 (54%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 188
YKRGF K+N +R+P++ N++IE L K +I+ VEDLIHEI+TVG FK A+NFLWPFKL+
Sbjct: 156 YKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLS 215
Query: 189 NPTGGWR-KKTIHYVDGGDFGNREDKVNELLRRMV 290
+P GGWR +K H+++GGD G R++ +N L+++M+
Sbjct: 216 SPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 122 bits (294), Expect = 1e-29
Identities = 49/95 (51%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 188
YKRGF K+N +R+ ++ N++IE L K +I+ +EDLIHEI+TVG FK A+NF+WPF+L+
Sbjct: 157 YKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLS 216
Query: 189 NPTGGWR-KKTIHYVDGGDFGNREDKVNELLRRMV 290
+P GGWR +K H+++GGD G R++ +N L+R+M+
Sbjct: 217 SPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 92.3 bits (219), Expect = 2e-20
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 188
YKRGF K+NG+R+ ++ N+LIE+ L K ++I +ED+IHEI+ VG FK + FLWPF L
Sbjct: 155 YKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLT 214
Query: 189 NPTGG-WRKKTIHYVDGGDFGNREDKVNELLRRMV 290
KK H+ +G G +++NEL+++ V
Sbjct: 215 PVKHSLMEKKVKHFNEGRKAGYCGEEINELIKKQV 249
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 31.1 bits (67), Expect = 0.046
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 64 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 168
HSS + L+N+ SSAL+++ + S +SSS+Q +S
Sbjct: 90 HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSS 124
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 0.75
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 220 IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMF--CLLSLFSMSELEVI 50
IV++ Q + LFSL G L ++ + T+ SW ++ CLLS+ + ++ I
Sbjct: 68 IVYILQ--IFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -2
Query: 182 FEWPQEVTCVLELLTDSKYLMDEILNADDV-LFAKSLLD 69
F W CV S+Y+M +N D FA S LD
Sbjct: 125 FNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLD 163
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 290 DHSPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQF 180
D + L D ++A+TE+A +V +L P V+ F
Sbjct: 232 DRDSDNLADCLMAITEIA--EVFPKLFKPIFESVIAF 266
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 2.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 55 PPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 183
PP HS+ D++N ++ AL S+M + ++ST+ T ++N
Sbjct: 110 PPFHSANSDVSNNSNGALS-SNMLKTHAHHTNSTKSTIFRNAN 151
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -3
Query: 154 YLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGT 44
Y++ PT+++ ++ S+ +FCL L S++ LE++ T
Sbjct: 253 YVHEYPTLDLIYIFSALMSVFCL--LLSVASLELLHT 287
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 87 KQNIICVEDLIHEIFTVGEKFKYASNFLWPFK 182
KQ ++ +E L H++ + K+AS F PF+
Sbjct: 179 KQKLVELE-LSHKVCVISYSAKFASGFFGPFR 209
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 188 VQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAKSLLD 69
V+F PQ + +L +KYL D+++ D+ A L+D
Sbjct: 136 VKFTEPQIKCYMKQLFAGTKYLHDQLILHRDLKAANLLID 175
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 4.0
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 211 LRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSE 62
LR P L +L GH + L +SP SST C+ L + E
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEKIGE 360
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 4.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 7 GTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVR 144
GT SPN ++ RSP +SR + + RI S+ LL+ R
Sbjct: 342 GTPQSSPNFNPAMRRSPVGAASRSPSRSTIGISNRIGSVDDLLNTR 387
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 46 SRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 168
S + +HSS ++ +SS+ R SS ++ SSST +++
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST 252
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 4.0
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 220 IVFLRQPPVGLFSLNGHR-KLLAYLNFSPTVNIS 122
++F RQP + S+ GHR +++ Y F ++++
Sbjct: 448 VIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVT 481
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 5.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 40 SVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN*TT 192
SVS + P++++ L + S+ +SS + +SST +TS + T+
Sbjct: 515 SVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATS 565
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 57 SNSLIEKRLSKQNIICVEDLIHE 125
S+++++KRL+K+N + E +I E
Sbjct: 1095 SDTILKKRLAKKNNVSAESIIIE 1117
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -3
Query: 205 QPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFC 89
QP L+ L GH + + + P +I W S + C
Sbjct: 164 QPSRLLYKLTGHSRGIECITRQPNTDIFWTCGSESSIRC 202
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 23.8 bits (49), Expect = 7.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 257 LAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 99
L +A + VVN LAPT+ +W + V L+ T K + L++D
Sbjct: 215 LGARRLAPLGVVNTQLAPTAQIDALLQWTRSVAECLKNGTLLKIGNTDSLSSD 267
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 145 FSPTVNISWMRSSTQMMFCLLSLFSMSELEVIG 47
F+ +N +W R + + C+L+ F E + +G
Sbjct: 314 FAEKINGAWRRFTGDEVGCILAYFIFQEYKNVG 346
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 155 VLELLTDSKYLMDEILNADDVLFAKSLLD 69
+LE L+ +++DE D+ FA+S+L+
Sbjct: 183 ILESLSTDSFILDEADRLMDMGFAESILN 211
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -2
Query: 287 HSPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMD 117
H P +L L V ++ + L P + + PQ V + +L S + MD
Sbjct: 161 HQPSKLTQNSLREMTVWVMETMRLFLRPQKTLKDSMDSPQNVNVLFDLSNFSLHNMD 217
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 23.4 bits (48), Expect = 9.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 34 TGSVSRSPPTHSSRRDLANRTSSALRIS-SMRYLLSVRSSSTQVTSCGHSN 183
T S S S THSS A +SSA+ S + L++ SS+T ++S S+
Sbjct: 708 TYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSS 758
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,842
Number of Sequences: 5004
Number of extensions: 19425
Number of successful extensions: 98
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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