Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_A08
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 138 1e-33
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 130 3e-31
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 77 3e-15
08_02_1362 + 26406710-26408530 28 2.1
03_06_0022 + 31085819-31086305,31086448-31087334 27 3.7
09_02_0154 + 5055946-5058721,5058754-5058770 27 4.9
01_07_0014 - 40455673-40455723,40455815-40455892,40455987-404560... 27 4.9
02_04_0580 + 24065830-24065967,24066163-24067425 26 6.4
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 26 8.5
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 26 8.5
03_05_0081 - 20577619-20577632,20577760-20577998,20578817-205788... 26 8.5
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 26 8.5
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 138 bits (333), Expect = 1e-33
Identities = 59/93 (63%), Positives = 74/93 (79%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 188
YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+HEI TVG FK A+NFLWPFKL
Sbjct: 152 YKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLK 211
Query: 189 NPTGGWRKKTIHYVDGGDFGNREDKVNELLRRM 287
P GG +KK HYV+GGD GNRED +NEL+RRM
Sbjct: 212 APLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 130 bits (314), Expect = 3e-31
Identities = 59/99 (59%), Positives = 75/99 (75%), Gaps = 6/99 (6%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGEKFKYASNFL 170
YKRG+ KLN +R+P+T+N +IE+ L K +IIC+EDL+HEI TVG FK A+NFL
Sbjct: 151 YKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEANNFL 210
Query: 171 WPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLRRM 287
WPFKL P GG +KK HYV+GGD GNRE+ +NEL+RRM
Sbjct: 211 WPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 77.4 bits (182), Expect = 3e-15
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +3
Query: 9 YKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 188
YK+G L+ + P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASNFL PFKL
Sbjct: 154 YKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMPFKLK 213
Query: 189 NPTGGWRKKTIHYVDGGD 242
P + K + DG +
Sbjct: 214 CPERRLQMKKKPFKDGAE 231
>08_02_1362 + 26406710-26408530
Length = 606
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 284 SPEELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDS--KYLMDEI 111
SP E+VD + AV + A + LA ++ VQ P+ V LL S + +D
Sbjct: 75 SPSEMVDYLYAVDDAIAATALQGELASRAAETVQAAMPRLEEEVRALLGSSARRLSLDSF 134
Query: 110 LNADD 96
+ DD
Sbjct: 135 EDLDD 139
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 254 AVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCV 153
A+ V V V L AP +SR+ WP++ TC+
Sbjct: 229 ALALVPNVLPVGPLEAPATSRLAGHFWPEDTTCL 262
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 175 GHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVI 50
G RK+ +++ F V SW++ +T F LL + S+ +++
Sbjct: 555 GSRKIRSFILFDEEVQFSWIQKATS-NFRLLRVLSLRYAKIV 595
>01_07_0014 -
40455673-40455723,40455815-40455892,40455987-40456049,
40456250-40456390,40456851-40456949,40457403-40457477,
40457556-40457652,40457738-40457805,40458456-40458512,
40458613-40458671,40458798-40458921,40459208-40459264,
40459378-40459457,40459585-40459793,40459868-40459986
Length = 458
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 187 FSLNGHRKLLAYLNFSP-TVNISWMRSSTQMMFCLLSL 77
F+L+ H K ++ ++FSP T N+ S C+ SL
Sbjct: 375 FTLHAHEKAVSSISFSPSTPNVKLWDLSNNQPSCIASL 412
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 21 FAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTG 200
FA NG+ + S + I+ L V +L +E+F +S F++P+K+ T
Sbjct: 105 FADPNGRGLRALSRAQIDSVLDLARCTIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTC 163
Query: 201 GWRK 212
G K
Sbjct: 164 GTTK 167
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 46 SRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 168
+R P S++ D+A R +ALR+ L+++ ++T + +
Sbjct: 412 TRMPNLFSNKTDMAIRLFTALRLEEQSLRLTIQEAATALAT 452
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 46 SRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 168
+R P S++ D+A R +ALR+ L+++ ++T + +
Sbjct: 408 TRMPNLFSNKTDMAIRLFTALRLEEQSLRLTIQEAATALAT 448
>03_05_0081 -
20577619-20577632,20577760-20577998,20578817-20578873,
20579001-20579632,20582728-20583105
Length = 439
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 51 ITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWP 176
+TS SLI + ++C+ + + +FT GE+ A + + P
Sbjct: 378 VTSLSLIVAAIIAAIVMCLREYLSYVFTQGEEVARAVSSMTP 419
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 160 LAYLNFSPTVNISWMRSSTQMMFCLLSL 77
L++ +F PTV + +RS T + CL+ +
Sbjct: 192 LSHCSFRPTVEVVSLRSLTSLDLCLVRI 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,097
Number of Sequences: 37544
Number of extensions: 120701
Number of successful extensions: 392
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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