Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A07
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0599 + 20897093-20898357,20898507-20898589,20899840-208999...    29   1.9  
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    29   1.9  
12_01_0212 - 1605544-1605647,1605799-1605842,1606189-1606230,160...    27   4.3  
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    27   4.3  
02_04_0292 + 21642544-21642726                                         27   4.3  

>12_02_0599 +
           20897093-20898357,20898507-20898589,20899840-20899903,
           20900057-20900354,20900385-20900426
          Length = 583

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = -3

Query: 404 HYYDATTDIRACFFANYTSALGTCKILMYLPPA*YSDFVII*RNYTPHTLYAGT*VP*WT 225
           HY +   D+R   F     A+G    +M L      D  +I  NYTP    +G  +  WT
Sbjct: 246 HYLEFPADVRGACFGGCCQAVGVTNGVMKLVSL-VPDDGLIAENYTPE---SGFTIVCWT 301

Query: 224 LRFIILSK 201
           LR   + K
Sbjct: 302 LRMDEMDK 309


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 273 LHPTHTIRRYMSSVMDLEIHYFEQISNL 190
           + PT T+RR M++V  L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356


>12_01_0212 -
           1605544-1605647,1605799-1605842,1606189-1606230,
           1606306-1606394,1606477-1606521,1606801-1606845,
           1606874-1606981,1607065-1607150,1607553-1607640,
           1608185-1608385,1608790-1608865,1608951-1609000,
           1609082-1609144,1609225-1609278,1609395-1609497,
           1610010-1610050,1610654-1610685,1612086-1612224
          Length = 469

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 25  CPKWI*YNTLYLGNFVYWL 81
           C  W+ +NTL+  +F YW+
Sbjct: 68  CTSWVIFNTLFGLSFTYWM 86


>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 195 NLCHGQQHSRLSTLRRIFPDKLCVYKVILLVY*LTNYIKPVYKIT*I*CIVLNPFGTLAA 16
           NLC  +++ + +    +FP  LCV  V+L         KP Y+     C+   P GT   
Sbjct: 27  NLCFQRRNMKTNACITVFPVFLCVILVVLQGVINHEINKPKYQCG-CACVDAAPDGTCRR 85

Query: 15  ASCRI 1
             C +
Sbjct: 86  TECGV 90


>02_04_0292 + 21642544-21642726
          Length = 60

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 267 PTHTIRRYMSSVMDLEIHYFEQ 202
           P  T+RRY S++ DL  H FE+
Sbjct: 18  PPDTVRRYESAISDLAGHGFEE 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,157,467
Number of Sequences: 37544
Number of extensions: 172222
Number of successful extensions: 300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)