Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_A05
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 221 2e-58
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 221 2e-58
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 132 1e-31
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.65
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.86
04_03_0232 - 13049649-13052807 29 2.6
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 8.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 221 bits (540), Expect = 2e-58
Identities = 100/128 (78%), Positives = 113/128 (88%)
Frame = -1
Query: 475 HLREQRWSDKVFK*AHMVTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 296
H R QRW+DK +K +H+ WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 295 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 116
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 134
Query: 115 EKKERPRS 92
EKKE+PRS
Sbjct: 135 EKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 221 bits (540), Expect = 2e-58
Identities = 100/128 (78%), Positives = 113/128 (88%)
Frame = -1
Query: 475 HLREQRWSDKVFK*AHMVTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 296
H R QRW+DK +K +H+ WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 295 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 116
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 245 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 304
Query: 115 EKKERPRS 92
EKKE+PRS
Sbjct: 305 EKKEKPRS 312
Score = 217 bits (531), Expect = 3e-57
Identities = 98/126 (77%), Positives = 111/126 (88%)
Frame = -1
Query: 475 HLREQRWSDKVFK*AHMVTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 296
H R QRW+DK +K +H+ WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 295 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 116
KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK 134
Query: 115 EKKERP 98
EKKE+P
Sbjct: 135 EKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 132 bits (320), Expect = 1e-31
Identities = 59/89 (66%), Positives = 69/89 (77%)
Frame = -1
Query: 475 HLREQRWSDKVFK*AHMVTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 296
H R QRW+DK +K +H WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 295 KNGKKVTAFVPRDGCLNHIEENDEVLVAG 209
KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 146 KNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -1
Query: 229 DEVLVAGFGRKGHAVGDIPGVRFKVVK 149
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.65
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 147 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 278
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 30.3 bits (65), Expect = 0.86
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 304 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR--GSPSISSP 426
V +H WL +A+ LQR +FR H++HH+R G + S P
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQRRGGRYNFSQP 227
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 43 ASRRRQRVTHLSQCKPMTWASPSFL-CTEL 129
++R R RV HLSQC +++SP FL C+ L
Sbjct: 346 SNRSRLRVLHLSQC-TFSFSSPPFLGCSNL 374
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 153 TTLNLTPGMSPTAWPLRPNPATNTSS 230
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,568,201
Number of Sequences: 37544
Number of extensions: 336906
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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