Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A04
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    44   8e-06
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    29   0.42 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   1.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   3.0  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   4.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   9.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   9.1  

>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +3

Query: 153 NND*TIMSLSPEVLLTHQSRIRLIKKLKDLSGLALKNESSVVR-ASVLVPICVVKGDVCI 329
           N D T+ SLS ++ L H++R            L LK  +   R ASVL+P+        +
Sbjct: 83  NGDLTMDSLSHQIYLLHKNR----------PTLPLKPTNQPTRFASVLMPLVNTSQGASL 132

Query: 330 LYTLRSLNLNSPSGQVSYPGGKRDHNE-TATETALRET 440
           L T RS NL S +GQ+ +PGG+ + ++ +    ALRET
Sbjct: 133 LLTQRSPNLRSHAGQMCFPGGRVEPSDGSHYYAALRET 170


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 212 YTINKKIKGSFWACSQK*ILCSAGFSTSSNMCSKRRCMYTI-HSEIIKFKFSQWSSVISW 388
           Y    K  G  +A  +K  L    FSTSSN+  + R +  + H  +I+F FS W  ++  
Sbjct: 239 YKARNKFDGVEYAL-KKIPLRLRSFSTSSNIFRESRTLARLNHPNVIRF-FSSWVELLPS 296

Query: 389 REKR 400
            EK+
Sbjct: 297 SEKQ 300


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 176 RHDCLVIILRKNIKSNVKSIAKFELY 99
           RHD L  +   ++K+  K ++KFE Y
Sbjct: 779 RHDLLRQVAMSSVKAETKELSKFEKY 804


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/26 (34%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +2

Query: 323 MYTIHSEIIKFKFSQWSSVI-SWREK 397
           ++++H E+I F F+ ++ +I S++EK
Sbjct: 319 LFSVHDEVIPFSFNPYNDLIFSFKEK 344


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 343 LRVYSIHTSPFTTHIGTSTEARTTEDSFLRASPERSFNFFIN 218
           L +Y       T+H  T+T +  ++++    SP+  F++FI+
Sbjct: 21  LSLYKRRLHKSTSHSSTATSSHYSKNNLPSDSPDLLFDYFID 62


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 326  YTIHSE-IIKFKFSQWSSVISWRE 394
            Y+IH   + +FKF+  S  ISW++
Sbjct: 1968 YSIHIRPVSEFKFNWTSEAISWKD 1991


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 NESSVVRASVLVPICVVKGDVCILYTLRSLNL 356
           +ESS + A  LV   + +GDV ++Y  R ++L
Sbjct: 319 DESSNILAHHLVKNGIERGDVVMVYAYRGVDL 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,574
Number of Sequences: 5004
Number of extensions: 31490
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)