Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A04
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610           43   1e-04
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301...    42   2e-04
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385...    38   0.005
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022...    27   6.8  

>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
          Length = 164

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +3

Query: 315 GDVCILYTLRSLNLNSPSGQVSYPGGKRDHNET-ATETALRETK 443
           GD  ++ T R+ +L+S SG+VS PGGK +  +  AT TALRE K
Sbjct: 79  GDPRVILTKRAASLSSHSGEVSLPGGKVEEGDADATATALREAK 122


>08_02_0479 +
           17627605-17627839,17628965-17629107,17630018-17630137,
           17630497-17630721
          Length = 240

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
 Frame = +3

Query: 279 RASVLVPICVVKG---DVCILYTLRSLNLNSPSGQVSYPGGKRDHNET-ATETALRETK 443
           RA+VL  IC+ +G   ++ +L T RS  L+S SG+VS PGGK +  +     TALRE K
Sbjct: 48  RAAVL--ICLFRGAAGELRVLLTKRSSKLSSHSGEVSLPGGKAEEGDADDAATALREAK 104


>08_02_0481 +
           17636359-17636593,17638136-17638278,17638431-17638550,
           17638916-17639116
          Length = 232

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
 Frame = +3

Query: 279 RASVLVPICVVK-----GDVCILYTLRSLNLNSPSGQVSYPGGKRDHNET-ATETALRET 440
           RA+VLV  C+ +     G++ ++ T RS +L++ SG+V+ PGGK +  +     TALRE 
Sbjct: 46  RAAVLV--CLFRRRGGDGELRVILTKRSSSLSTHSGEVALPGGKAEEGDADDAATALREA 103

Query: 441 K 443
           K
Sbjct: 104 K 104


>12_02_1229 +
           27197464-27197481,27200438-27201583,27201935-27202201,
           27202849-27202882,27202997-27203100,27203174-27203308,
           27203367-27203511,27203864-27203880
          Length = 621

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 319 SPFTTHIGTSTEARTTEDSFLR 254
           SPF  H+ +ST  R  E SFLR
Sbjct: 134 SPFILHVFSSTTGRWEEKSFLR 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,952,273
Number of Sequences: 37544
Number of extensions: 164013
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)