Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_A03
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   1.5  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   3.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   4.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   6.1  

>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 73  GIR*FLPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGNDNKHEQDD 252
           G+R  L  N Y +L  +  + G   ++ +D+ KF+  ++++ ET    L+  D+ H+  D
Sbjct: 100 GVRKNLEKNFYKNLNEYVFISGEVESMTSDFKKFQSLLKTL-ETDIEGLNLVDHTHDPSD 158

Query: 253 NSSK 264
            S K
Sbjct: 159 ESIK 162


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 89  RNHRIPFYHPNGQPTPEL 36
           R+  +P  HPN +P P+L
Sbjct: 343 RSESLPLTHPNSEPNPKL 360


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 141  DSEDLVMNTEIKIVVIRQKSSDSVLPSKRAANTRI-TRYLML-EC 13
            DS DLV    I+   +   S    +PS   A TRI   Y++L EC
Sbjct: 950  DSNDLVRECSIRASSVSLGSIAKTIPSVLTAQTRILLSYMLLPEC 994


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 229 DNKHEQDDNSSKPKHPAAEIVRKGIEHGHKGLQKITSAV 345
           DN+H+Q   +   K   +E    GIEH  +  Q I  AV
Sbjct: 557 DNQHKQQWQAPSYKPLISEFFPMGIEHFIETAQSIVMAV 595


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 101 SLSGRNHRIPFYHPNG 54
           S S  NHRIP  HP+G
Sbjct: 325 SSSNDNHRIPQLHPDG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,536
Number of Sequences: 5004
Number of extensions: 43244
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)