Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P24
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   3.4  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   3.4  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    24   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   4.5  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    24   4.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   4.5  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   4.5  

>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +2

Query: 74  TRRLQTRVSEVPKTFTSYVVDQ 139
           TR ++ RVSEV +TF + ++++
Sbjct: 460 TREMEERVSEVERTFLTKLLEE 481


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 98  SEVPKTFTSYVVDQCRDKPLAI*LETTSNSIVIK*TT*GMYTVDILFRFCRYVKSVGVII 277
           S   ++  S ++D  +DK L     T+ + ++++    G   + + F FC Y +   +I+
Sbjct: 55  SSTIRSVISSLLDSLQDKALQQSPNTSLSKLLLEDQDFGSLWLSLSFIFCNYWQPAMLIL 114

Query: 278 D 280
           D
Sbjct: 115 D 115


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 130 SGSVPRQTSRHLARNNIKFNS 192
           +GS+ R+ SRH A N +  NS
Sbjct: 139 AGSILRECSRHEALNEVLLNS 159


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 228  STVYIPYVVYLITIEFD 178
            ST  I Y+++LI +EFD
Sbjct: 1694 STSIIQYIIHLILLEFD 1710


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 246  QNRNNISTVYIPYVVYLI 193
            QNR   S VY+PY   L+
Sbjct: 1174 QNRTRFSQVYLPYAAKLL 1191


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 267 PTLLTYRQNRNNISTVYIPYVVYLITI 187
           P  LT+ +     ST+ +PY+ Y  T+
Sbjct: 437 PRRLTFNRTHTKASTMSLPYLSYNATV 463


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 285 FLSIITPTLLTYRQNRNNISTVYIPYVVYLITIEFDVVSS 166
           +++I+T   + Y + +  +    IP+   LIT  F ++SS
Sbjct: 317 WIAIVTRNFMAYIETKRKLEFDSIPFNCPLITQLFPLISS 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,218,225
Number of Sequences: 5004
Number of extensions: 20483
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)