Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P24
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0167 + 5221910-5222516,5222826-5224642                           29   0.98 
05_07_0269 - 28837918-28838075,28840443-28840551,28840774-28841910     26   6.9  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    26   6.9  
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638...    25   9.2  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    25   9.2  
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737...    25   9.2  

>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   EDHH-QHRVLQYSESRRLGARGCTTRRLQTRVSEVPKTFTSYVVDQCRDKPLAI 163
           EDH    + LQ+ E+  L +R     R + +  E    +   +VD+C+  PLAI
Sbjct: 221 EDHCIMLKTLQWKEAWNLFSRKAFPSRKENQCPESVVQWAEKIVDKCKGLPLAI 274


>05_07_0269 - 28837918-28838075,28840443-28840551,28840774-28841910
          Length = 467

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 11  HHQHRVLQYSESRRLGARGCTTRRLQTRVSEVPKTFTSYVVDQCRDKPLAI 163
           HHQ+ +   S+S++     CT   LQ +V +  ++      D  RDK L I
Sbjct: 388 HHQNFIASKSDSQQKDEDKCTEHFLQNKVGQALES------DSIRDKGLEI 432


>03_02_0752 -
          10922456-10922644,10922719-10922796,10922888-10923016,
          10923105-10923152,10923243-10923333,10923517-10923648,
          10923869-10924086,10925121-10925271,10925360-10926009,
          10926715-10926786,10926938-10926985,10927105-10927242,
          10927750-10927756,10928064-10928212
          Length = 699

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 46 QAVGRPRVYYAPFTNASI 99
          Q+VGR R+YY P  N ++
Sbjct: 5  QSVGRRRIYYDPIVNEAL 22


>04_04_1268 -
           32262994-32263017,32263411-32263488,32263653-32263800,
           32263890-32264127,32264210-32264420,32264499-32264680,
           32264765-32264866,32265009-32266317,32266906-32266988,
           32267436-32267559
          Length = 832

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 249 RQNRNNISTVYIPYVVYLITIEF 181
           ++N+  ++  Y+P ++YL+ I F
Sbjct: 78  KKNKGQMNMAYLPVLIYLLLISF 100


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 45  PGGWAPAGVLRAVYKREYPKFLKRSRAT*WISAETNLSPS 164
           P GW+    L  V +R + + +K      WI A   + PS
Sbjct: 172 PSGWSVMQALTEVERRTHARKMKCGSVKMWIVALVEVRPS 211


>01_06_1674 +
           39072861-39073260,39073288-39073358,39073659-39073716,
           39074604-39074659,39075179-39075400
          Length = 268

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 12  TTSIAYCSTVNPGGWAPAGVLRAVYKREYPKFLKRSRA 125
           T SI+Y + +  G W+P G  R +     P F +  R+
Sbjct: 212 TRSISYFAKLQRGDWSPHGTARKLKVIRGPSFSEGIRS 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,840,845
Number of Sequences: 37544
Number of extensions: 130036
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)