Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P24
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical pr...    51   1e-07
Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z81509-9|CAB04158.3|  503|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z81463-12|CAB03855.3|  503|Caenorhabditis elegans Hypothetical p...    27   3.5  
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    26   4.7  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    26   4.7  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    26   4.7  

>Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical
           protein F25H2.6 protein.
          Length = 573

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 9   ITTSIAYCSTVNPGGWAPAGVLRAVYKREYPKFLK 113
           +  +I Y S V+PGGW P   LR VYK+EYPKFL+
Sbjct: 522 VKCNIIYVSQVHPGGWVPTAALRHVYKKEYPKFLR 556


>Z93377-9|CAE17792.1|  350|Caenorhabditis elegans Hypothetical
           protein F13A7.13 protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 300 RLNYRFLSIITPTLLTYR-QNRNNISTVYIPYVVYLITIEFDVV 172
           R N R    IT   L  + Q   N+ ++ + + +Y+I I FD+V
Sbjct: 221 RNNMRLARNITKNSLAAKFQTEENLRSISLAFRIYIIMIIFDIV 264


>Z81509-9|CAB04158.3|  503|Caenorhabditis elegans Hypothetical
           protein F21A3.7 protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -1

Query: 282 LSIITPTLLTYRQNRNNISTVYIPYVVYLITIEFDVVSS*MARGLSRH 139
           +S +T ++  Y +  + +  + +P+  YL  + FD+  S +AR LSR+
Sbjct: 259 MSTVTTSMFVYLERESRVK-MNVPW--YLKWLSFDISPSKIARKLSRY 303


>Z81463-12|CAB03855.3|  503|Caenorhabditis elegans Hypothetical
           protein F21A3.7 protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -1

Query: 282 LSIITPTLLTYRQNRNNISTVYIPYVVYLITIEFDVVSS*MARGLSRH 139
           +S +T ++  Y +  + +  + +P+  YL  + FD+  S +AR LSR+
Sbjct: 259 MSTVTTSMFVYLERESRVK-MNVPW--YLKWLSFDISPSKIARKLSRY 303


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 70  YYAPFTNASIRSS*NVHELRSGSVPRQTSRHLARNNIKFNSN*INYIGDVYC 225
           ++AP    +I +  + HE  S S+    + H A  N++  S+ + Y+ +  C
Sbjct: 379 HFAPLYYGTITTLQSFHETFSMSLNDFVNNHHANRNLRVRSSWVKYVFNGVC 430


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 70  YYAPFTNASIRSS*NVHELRSGSVPRQTSRHLARNNIKFNSN*INYIGDVYC 225
           ++AP    +I +  + HE  S S+    + H A  N++  S+ + Y+ +  C
Sbjct: 379 HFAPLYYGTITTLQSFHETFSMSLNDFVNNHHANRNLRVRSSWVKYVFNGVC 430


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 306 ILRLNYRFLSIITPTLLTY----RQNRNNISTVYIPYVVYL 196
           I  L    + II P++L Y    R   N+  TV++P+V YL
Sbjct: 260 ITNLACALMFIIFPSMLVYFIALRPFGNDCETVFVPWVFYL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,757,902
Number of Sequences: 27780
Number of extensions: 115621
Number of successful extensions: 282
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)