Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P23
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   157   9e-40
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    95   4e-21
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    81   5e-17
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   1.6  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   6.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   6.5  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  157 bits (380), Expect = 9e-40
 Identities = 70/107 (65%), Positives = 83/107 (77%)
 Frame = +3

Query: 72  MGVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFKIGKSEVIRGW 251
           MGV  + IS G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 252 DEGVAKMSVGERAKLTCTPDYAYGQQGHPGVIPPNSTLIFDVELLRL 392
           DEGV KMS+GE+AKLT TPDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 95.1 bits (226), Expect = 4e-21
 Identities = 50/106 (47%), Positives = 66/106 (62%)
 Frame = +3

Query: 75  GVTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFKIGKSEVIRGWD 254
           GV V  +  G  ++   +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD
Sbjct: 258 GVVVTDVKTGSGAS-ATNGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 255 EGVAKMSVGERAKLTCTPDYAYGQQGHPGVIPPNSTLIFDVELLRL 392
            GVA M  G   K+T     AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 81.4 bits (192), Expect = 5e-17
 Identities = 47/103 (45%), Positives = 58/103 (56%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFKIGKSEVIRGWDE 257
           VTV+    GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 258 GVAKMSVGERAKLTCTPDYAYGQQGHPGVIPPNSTLIFDVELL 386
           G+  M VG    +      AYG +  PG IP NS L+FDV+LL
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359



 Score = 24.2 bits (50), Expect = 8.6
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 36  KSVLCL*IRYKIMGVTVETI-SPGDESTYPKSGQTVVVHYTGT--LTNGKKFDSSRDRGK 206
           K  LC   +  +    ++ I SPG+E  + + G  + V+ +GT  +TN  + + S D   
Sbjct: 78  KFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSGTCIITNIPEEEDSSDLEN 137

Query: 207 PFKF 218
            F +
Sbjct: 138 DFLY 141


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 368 YECRIRRNDTRMTLLTVCI 312
           Y+   RR DT MTL+ VC+
Sbjct: 86  YQTHSRRGDTMMTLIYVCV 104


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 78  VTVETISPGDESTYPKSGQTVVVHYTGTLTNGKKFDS 188
           V+  ++  GD+  +P +GQT+ +  T    N KK  S
Sbjct: 175 VSNRSLEAGDDGVHPTAGQTLNIAPTMNDLNKKKSSS 211


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 141 VVHYTGTLTNG-KKFDSSRDRGKPFKFKIGKSEV 239
           V H +   TN    + SSRD G PF  ++  +EV
Sbjct: 598 VYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEV 631


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 249 WDEGVAKMSVGERAKLTCTPDYAYGQQGHPGVIPPNSTLI 368
           +D     +S  E A   C P+ +Y    +  V+PP+ ++I
Sbjct: 207 FDSKAHVVSENELADYFCLPEESYVMYSNKLVVPPSDSII 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,599
Number of Sequences: 5004
Number of extensions: 32988
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)