Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P22
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   3.3  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   4.4  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   7.7  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    24   7.7  

>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK 217
           N K  Y + + ++  E +F   T I+ NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 223 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVE 119
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 336 YAADKRRSYHRQYYPRQSG 392
           YAA+  +S  R YYP  SG
Sbjct: 418 YAANPNKSADRTYYPYYSG 436


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 107 TVKWFNVKSGYG-FINRNDTKEDV 175
           T+KW N+ SG G F+ + +  ED+
Sbjct: 879 TIKWDNLNSGPGPFVPQTENVEDL 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,573
Number of Sequences: 5004
Number of extensions: 23858
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)