Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P22
(401 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 132 2e-31
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 132 2e-31
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 126 1e-29
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 58 6e-09
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 58 6e-09
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 58 6e-09
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 32 0.25
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 32 0.25
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 32 0.25
AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-P... 30 1.0
BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p pro... 27 9.4
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot... 27 9.4
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB... 27 9.4
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 132 bits (319), Expect = 2e-31
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 262
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 263 VAGEKGYEAARVT 301
V GEKG EAA VT
Sbjct: 117 VIGEKGNEAANVT 129
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 270 GRKAMKQPELLGPGGESVKGSPYAADKRRSY 362
G K + + GP GE V+GS +AADKRR++
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 132 bits (319), Expect = 2e-31
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 262
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 263 VAGEKGYEAARVT 301
V GEKG EAA VT
Sbjct: 117 VIGEKGNEAANVT 129
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 270 GRKAMKQPELLGPGGESVKGSPYAADKRRSY 362
G K + + GP GE V+GS +AADKRR++
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 126 bits (303), Expect = 1e-29
Identities = 61/73 (83%), Positives = 65/73 (89%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 262
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+A I NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSA-IANNPKKAVRSVGDGEVVEFDV 116
Query: 263 VAGEKGYEAARVT 301
V GEKG EAA VT
Sbjct: 117 VIGEKGNEAANVT 129
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 270 GRKAMKQPELLGPGGESVKGSPYAADKRRSY 362
G K + + GP GE V+GS +AADKRR++
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 57.6 bits (133), Expect = 6e-09
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 283
G KWFNV G+GF+ ND ++VFVHQ+ I RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96
Query: 284 EAARVT 301
EA RV+
Sbjct: 97 EATRVS 102
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 57.6 bits (133), Expect = 6e-09
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 283
G KWFNV G+GF+ ND ++VFVHQ+ I RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96
Query: 284 EAARVT 301
EA RV+
Sbjct: 97 EATRVS 102
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 57.6 bits (133), Expect = 6e-09
Identities = 29/66 (43%), Positives = 38/66 (57%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGY 283
G KWFNV G+GF+ ND ++VFVHQ+ I RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI----QMSGFRSLGEQEEVEFECQRTSRGL 96
Query: 284 EAARVT 301
EA RV+
Sbjct: 97 EATRVS 102
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 98 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 196
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 98 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 196
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 98 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 196
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-PA
protein.
Length = 1227
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 199 DYRSLMYKHIFFGV-IPIDETISTLDVEPFDSTRNLFS 89
+YR L Y H F G+ +P D + + +EP +NLF+
Sbjct: 599 NYRELYYIHFFSGISLPNDLMYNMMPIEPRRMKKNLFN 636
>BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p
protein.
Length = 394
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 135 PLLTLNHLTVPETFSAM 85
P+LT+N L +P+TF +M
Sbjct: 91 PILTINSLAIPDTFCSM 107
>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
protein.
Length = 1910
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 135 PLLTLNHLTVPETFSAM 85
P+LT+N L +P+TF +M
Sbjct: 217 PILTINSLAIPDTFCSM 233
>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
isoform B protein.
Length = 2196
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 135 PLLTLNHLTVPETFSAM 85
P+LT+N L +P+TF +M
Sbjct: 503 PILTINSLAIPDTFCSM 519
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,801
Number of Sequences: 53049
Number of extensions: 287744
Number of successful extensions: 832
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1170601320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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