Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P22
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 112 1e-25
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 73 8e-14
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 70 7e-13
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 67 4e-12
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 67 4e-12
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 50 6e-07
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 50 6e-07
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 50 6e-07
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 50 6e-07
Z71179-2|CAA94889.2| 170|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z70755-8|CAA94786.2| 170|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF042392-1|AAC08943.1| 170|Caenorhabditis elegans FMRFamide-lik... 28 2.9
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 3.8
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 3.8
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 3.8
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 3.8
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical pr... 26 8.8
Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical pr... 26 8.8
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 112 bits (269), Expect = 1e-25
Identities = 52/73 (71%), Positives = 57/73 (78%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 262
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 263 VAGEKGYEAARVT 301
V G KG EAA VT
Sbjct: 76 VEGSKGLEAASVT 88
Score = 30.7 bits (66), Expect = 0.41
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 270 GRKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSGGRG 401
G K ++ + GP G V+GS YAAD+ + R GGRG
Sbjct: 78 GSKGLEAASVTGPDGGPVQGSKYAADR----DAENAARGRGGRG 117
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 72.9 bits (171), Expect = 8e-14
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 86 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 262
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 263 VAGEKGYEAARVT 301
V G+ G EAA VT
Sbjct: 122 VEGKNGPEAANVT 134
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 69.7 bits (163), Expect = 7e-13
Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 259
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 260 VVAGEKGYEAARVT 301
+V G+ G EAA VT
Sbjct: 119 LVDGKNGPEAANVT 132
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 67.3 bits (157), Expect = 4e-12
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAV 250
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 251 EFAVVAGEKGYEAARVT 301
F +V G KG EAA VT
Sbjct: 144 VFDIVEGLKGPEAANVT 160
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 67.3 bits (157), Expect = 4e-12
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Frame = +2
Query: 83 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAV 250
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 251 EFAVVAGEKGYEAARVT 301
F +V G KG EAA VT
Sbjct: 144 VFDIVEGLKGPEAANVT 160
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 277
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 278 GYEAARVT 301
G EA V+
Sbjct: 80 GREAYAVS 87
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 277
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 278 GYEAARVT 301
G EA V+
Sbjct: 111 GREAYAVS 118
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 277
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 278 GYEAARVT 301
G EA V+
Sbjct: 111 GREAYAVS 118
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 50.0 bits (114), Expect = 6e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +2
Query: 104 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 277
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 278 GYEAARVT 301
G EA V+
Sbjct: 111 GREAYAVS 118
>Z71179-2|CAA94889.2| 170|Caenorhabditis elegans Hypothetical
protein F07D3.2 protein.
Length = 170
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 RKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSGG 395
R+ MK+ G S G+P +KR+S + ++ R SGG
Sbjct: 27 REMMKRKSAYMRFGRSDGGNPMEMEKRKSAYMRFGKRSSGG 67
>Z70755-8|CAA94786.2| 170|Caenorhabditis elegans Hypothetical
protein F07D3.2 protein.
Length = 170
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 RKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSGG 395
R+ MK+ G S G+P +KR+S + ++ R SGG
Sbjct: 27 REMMKRKSAYMRFGRSDGGNPMEMEKRKSAYMRFGKRSSGG 67
>AF042392-1|AAC08943.1| 170|Caenorhabditis elegans FMRFamide-like
peptide 6 protein.
Length = 170
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 273 RKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSGG 395
R+ MK+ G S G+P +KR+S + ++ R SGG
Sbjct: 27 REMMKRKSAYMRFGRSDGGNPMEMEKRKSAYMRFGKRSSGG 67
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 163 GVIPIDETISTLDVEPFDSTRNL 95
G PID++ S++DV+P S+ NL
Sbjct: 1896 GTAPIDDSDSSMDVDPAGSSDNL 1918
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 163 GVIPIDETISTLDVEPFDSTRNL 95
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 163 GVIPIDETISTLDVEPFDSTRNL 95
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 149 NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 277
NRN K +F+ +I+ N PR +GDG E ++ EK
Sbjct: 131 NRNTMKAGIFIIIFSIVFNFPRFFDYKIGDGYLSEMWMLDTEK 173
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 163 GVIPIDETISTLDVEPFDSTRNL 95
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 113 KWFNVKSGYGFINRNDTKEDVFVHQTAII---RNNPRKAVRSVGDGEAVEFAVVAGEKGY 283
+W NVK+ ++ ++ + +F+ II RN A R + +E A + G GY
Sbjct: 230 QWLNVKTDINSVSLENSDDSIFMQMFNIISHERNRRWYAYRREHESLTLEEAYLIGNGGY 289
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 267 PGRKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSG 392
PG P+ G G + KG+P +HR Y R SG
Sbjct: 70 PGNTTRTTPDS-GLGTDDQKGTPQQTRAPPGFHRAAYHRNSG 110
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 267 PGRKAMKQPELLGPGGESVKGSPYAADKRRSYHRQYYPRQSG 392
PG P+ G G + KG+P +HR Y R SG
Sbjct: 70 PGNTTRTTPDS-GLGTDDQKGTPQQTRAPPGFHRAAYHRNSG 110
>Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical
protein F08A10.1c protein.
Length = 672
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 RRWSLPWLPGRKAMKQPELLGPGGESVKGSPYAADKRRSYHRQY-YPRQSGGRG 401
RR S+ +LP R+ +LGP G S R+S Y ++GG+G
Sbjct: 154 RRMSMAYLPSREQALLRRILGPQGLSWISHDRETASRKSVSIAYSNDLEAGGKG 207
>Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical
protein F08A10.1b protein.
Length = 655
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 RRWSLPWLPGRKAMKQPELLGPGGESVKGSPYAADKRRSYHRQY-YPRQSGGRG 401
RR S+ +LP R+ +LGP G S R+S Y ++GG+G
Sbjct: 154 RRMSMAYLPSREQALLRRILGPQGLSWISHDRETASRKSVSIAYSNDLEAGGKG 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,733,356
Number of Sequences: 27780
Number of extensions: 144542
Number of successful extensions: 384
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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