Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P21
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    57   6e-10
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    57   6e-10
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   0.97 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   2.2  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   3.0  
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    24   3.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    23   6.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    23   9.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    23   9.1  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    23   9.1  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 56.8 bits (131), Expect = 6e-10
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = +2

Query: 179 GHVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           G+V ++ GGNDKQGFPM QGVL   RVRLL+  GH C
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPC 83



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 88  KVVDEHKLRIFYEKRMGAEVDADLLGHELERSXXXXXXXXXQAGLPYETG 237
           ++ D+ +LR+F EKRMG EV  D +G E             + G P   G
Sbjct: 17  EIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQG 66



 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 33 MKLNVSYPATG 65
          MKLN+SYPA G
Sbjct: 1  MKLNISYPANG 11


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 56.8 bits (131), Expect = 6e-10
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = +2

Query: 179 GHVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           G+V ++ GGNDKQGFPM QGVL   RVRLL+  GH C
Sbjct: 47  GYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPC 83



 Score = 34.7 bits (76), Expect = 0.003
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 88  KVVDEHKLRIFYEKRMGAEVDADLLGHELERSXXXXXXXXXQAGLPYETG 237
           ++ D+ +LR+F EKRMG EV  D +G E             + G P   G
Sbjct: 17  EIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQG 66



 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 33 MKLNVSYPATG 65
          MKLN+SYPA G
Sbjct: 1  MKLNISYPANG 11


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 0.97
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 285 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 202
           EWP  +K   +LLVRT  +   PC + P
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 213 LSLPPATRRT*PFQFVA*KICINFSAHTLFIEDTEL-VLIHH 91
           L   P+T    PF+ V  ++C +   +  F   TEL +LIHH
Sbjct: 167 LQTVPSTDSLPPFETVLCRVCDHEIQNWYFEHHTELCLLIHH 208


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = -1

Query: 150 INFSAHTLFIEDTELVLIHHLPY*ISDN------IPLPGMKRSTS*LRSVP 16
           IN + HT  ++ T  +L HH P   S +       P P + + T+  R +P
Sbjct: 535 INIAEHTPVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKRRELP 585


>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 73  RNLVRKVVDEHKLRIFYEKRMG 138
           R+LV +   EHK + FYEK +G
Sbjct: 44  RDLVEEHYAEHKGKPFYEKLVG 65


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 85   RKVVDEHKLRIFYEKRMGAEVDADLLGHELERS 183
            ++ + E  L  FY   + AE + D LGH LE S
Sbjct: 931  KQTLSELPLTRFYRYSISAEPEFDALGH-LEES 962


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  FHTRQRDVIRNLVRKVVDEHKLRIF 120
           +H +QR   R LVR +   +K RI+
Sbjct: 701 YHAKQRIDFRELVRDLFKVYKTRIW 725


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 58  QRDVIRNLVRKVVDEHKLRIFYEKRMGAEVDADLL 162
           +R ++RN+   +   HK  +F   R+    D D++
Sbjct: 615 ERALLRNINDLIKGSHKTSVFIAHRLRTIKDCDII 649


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 164 ATNWNGHVLRVAGGNDKQ 217
           A +WN  +  V GG DKQ
Sbjct: 410 AVDWNKSIGIVTGGTDKQ 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,450
Number of Sequences: 5004
Number of extensions: 18929
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)