Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P21
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    58   2e-09
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    56   4e-09
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337...    30   0.36 
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192...    27   3.3  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   3.3  
11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122     26   4.4  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 31/39 (79%)
 Frame = +2

Query: 173 WNGHVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           + G+V ++ GG DKQGFPMKQGVLT+ RVRLL+ +G  C
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTPC 83



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 88  KVVDEHKLRIFYEKRMGAEVDADLLGHELERSXXXXXXXXXQAGLPYETG 237
           ++ D+ KLR FY+KR+  EV  D LG E +           + G P + G
Sbjct: 17  EIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +2

Query: 173 WNGHVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           + G+V ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C
Sbjct: 45  FKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTPC 83



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 88  KVVDEHKLRIFYEKRMGAEVDADLLGHELERSXXXXXXXXXQAGLPYETG 237
           ++ D+ KLR F++KR+  EV  D LG E +           + G P + G
Sbjct: 17  EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQG 66


>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
            12933905-12934118,12934199-12934551,12934642-12934864,
            12934953-12935230,12935456-12935725,12935817-12935939,
            12936025-12936102,12936351-12936527,12936597-12936686,
            12937010-12937120,12937397-12937585,12937667-12937858,
            12937990-12938076,12938153-12938257,12938340-12938396,
            12938471-12938545,12938647-12938763,12938876-12939000,
            12939082-12939121,12939241-12939291,12939382-12939569,
            12939808-12939901,12939976-12940149,12940242-12940337,
            12940597-12940689,12940794-12940955,12941034-12941240,
            12941356-12941728,12942379-12942436,12943096-12943171,
            12943874-12943941,12944321-12944642
          Length = 2433

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 52   TRQRDVIRNLVRKVVDEHKLRIFYEKRMGAEVDADLLGHEL 174
            T  R   + +++KVVD  + R F+ KR+   +  D+L  E+
Sbjct: 2272 TSLRMAAKGVIKKVVDWEESRSFFYKRLRRRISEDVLAKEI 2312


>10_01_0171 +
           1917520-1918056,1919201-1919336,1921873-1922060,
           1922491-1922694,1923913-1924425
          Length = 525

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 185 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           VLR+  GND     ++ G + NS + ++ +  H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 73  RNLVRKVVDEHKLRIFYEKR 132
           + L +++ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513


>11_06_0522 + 24568070-24568571,24568710-24569825,24569968-24570122
          Length = 590

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 205 TSGNTEDMTVPVRGLEDLHQLQRPYAFHRRYGACAHP 95
           T+ N   + VP+  + + H     Y FH      AHP
Sbjct: 315 TTANNNGLPVPMPIMPNQHNTMPSYYFHANLTGLAHP 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,291
Number of Sequences: 37544
Number of extensions: 139917
Number of successful extensions: 332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)