Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P21
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    73   3e-14
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   2.2  
AL132872-3|CAB60759.1|  103|Caenorhabditis elegans Hypothetical ...    27   3.0  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    26   3.9  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    26   3.9  
AF016429-5|AAB65367.1|  305|Caenorhabditis elegans Hypothetical ...    25   6.8  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 29/39 (74%), Positives = 34/39 (87%)
 Frame = +2

Query: 173 WNGHVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 289
           W G+V+R+ GGNDKQGFPMKQG+LTN RVRLL+ KG SC
Sbjct: 45  WKGYVVRIGGGNDKQGFPMKQGILTNGRVRLLLKKGQSC 83



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 88  KVVDEHKLRIFYEKRMGAEVDADLLGHELERSXXXXXXXXXQAGLPYETG 237
           +V +E KLR+F+EKRM  EV  D LG E +           + G P + G
Sbjct: 17  EVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQG 66


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 258 TRLLVRTPCFIGKPCLSLPPATRR 187
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>AL132872-3|CAB60759.1|  103|Caenorhabditis elegans Hypothetical
           protein Y116F11A.6 protein.
          Length = 103

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 61  RDVIRNLV-RKVVDEHKLRIFYEKRMGAEVDA--DLL 162
           RDV+  LV R V+  +++   YEK  G +VDA  DLL
Sbjct: 34  RDVVPLLVARNVLRSYEMGALYEKGSGEQVDALIDLL 70


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 52  TRQRDVIRNLVRKVVDEHK-LRIFYEKRMGAEVDADLLG 165
           T +  +I  L  + VD+ + +R+ YEK  G  ++AD+ G
Sbjct: 102 TDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAG 140


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 52  TRQRDVIRNLVRKVVDEHK-LRIFYEKRMGAEVDADLLG 165
           T +  +I  L  + VD+ + +R+ YEK  G  ++AD+ G
Sbjct: 102 TDEAVLIEILCSRTVDQLRAIRVTYEKEYGKALEADIAG 140


>AF016429-5|AAB65367.1|  305|Caenorhabditis elegans Hypothetical
           protein T21H3.1a protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 259 YTAVSQDSLFHREALLVVTSGNTEDMTVPVRGLEDLHQLQRPYA 128
           YTAVS       +A++VV  G   ++ + + GLE + +   P+A
Sbjct: 89  YTAVSPQD----KAIIVVFRGTNNNVQLILEGLETVFEYHTPWA 128


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 264  RRTRLLVRTPCFIGKPCLSLPPATRRT 184
            R   +++    F G+PCLSLP    +T
Sbjct: 1067 RCNNIVMECEVFNGQPCLSLPDVMSKT 1093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,383,850
Number of Sequences: 27780
Number of extensions: 112008
Number of successful extensions: 265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)