Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P21
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.76 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.76 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   7.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 0.76
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 285 EWPFDIKRRTRLLVRTPCFI 226
           EWP  +++R  L +   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 0.76
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 285 EWPFDIKRRTRLLVRTPCFI 226
           EWP  +++R  L +   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 276 FDIKRRTRLLVR--TPCFIGKPCLSLPP 199
           + +KR  R ++   +  ++G  C+SLPP
Sbjct: 149 YGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 38  VERFIPGNGML 70
           +E ++PGNG++
Sbjct: 416 IEEYLPGNGVI 426


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 51  YPATGCYQKFS 83
           YP TGC   FS
Sbjct: 298 YPLTGCLYYFS 308


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 212 KQGFPMKQGV 241
           K+GF +KQG+
Sbjct: 352 KKGFKLKQGI 361


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 133  YAFHRRYGACAHPPPS 86
            Y  H     CA PPP+
Sbjct: 1742 YHEHAMTEGCASPPPA 1757


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 133  YAFHRRYGACAHPPPS 86
            Y  H     CA PPP+
Sbjct: 1738 YHEHAMTEGCASPPPA 1753


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,702
Number of Sequences: 438
Number of extensions: 1323
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)