Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P20
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    30   0.13 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   2.7  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   2.7  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   3.6  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   6.2  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   6.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   6.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   8.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   8.2  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    24   8.2  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    24   8.2  

>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 132 STAVEKKGRGRPKANGTQSETKEV---KKRGRPPAAAPKTKESAKSSDDEQAPV 284
           ST V+KK   +PK   T+ ET +V        PP   P  KE A + +  + PV
Sbjct: 180 STYVQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPV 233


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
 Frame = +3

Query: 147 KKGRGRPKAN-------GTQSETKEVKKRGRPPAAA 233
           K+GRGRP+          ++S++   +KRGRPP  A
Sbjct: 339 KRGRGRPRLERPSGLPLDSKSQSLFKRKRGRPPKIA 374



 Score = 24.6 bits (51), Expect = 6.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +3

Query: 138 AVEKKGRGR---PKANGTQSETKEVKKRGRPP---AAAPKTK 245
           A  ++GR R   PK     SE    +KRGRPP   +++P TK
Sbjct: 99  APRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +3

Query: 144 EKKGRGRPKANGTQ-SETK---EVKKRGRPPAAAPKT 242
           +KK + + KA G Q S TK   +VKK+G+  A  P+T
Sbjct: 19  QKKIKTKKKATGQQTSNTKNLRDVKKKGKQLAYVPRT 55


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 414 KLHLSWMLLHPCAADHGLFLQLVHS 340
           +L L   LLHPC   + +F + +HS
Sbjct: 109 ELFLRQCLLHPCIRSNPIFDKFIHS 133


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 126 DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTK 245
           DG      +   + +    ++E    +KRGRPP A  K K
Sbjct: 303 DGLNDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 24  ILLPPAINSLWPITVTFCCERC 89
           +++ PA+N    +TV  CC  C
Sbjct: 570 VIVKPALNPAERMTVRICCHDC 591


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 124 SDILLNSKRAK*QRSQQNVTVIGQREFMAGGSN 26
           SD+++ + +A+ +R Q+N  V+   E + G S+
Sbjct: 506 SDVIIEATQAEPKRRQKNSRVVFDEEDLTGDSH 538


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 135 TAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKES-AKSSDDEQ 275
           T  + KG+       + +ETK  K + +P A    +KE  +KSS  ++
Sbjct: 71  TDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDE 118


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 190 SDCVPFAFGLPRPFFSTAVDPSSDILLNSKRAK*QRSQQNVTVIGQR 50
           SD  P A+  P P      DP+ D  L +++A  Q +QQ   +  Q+
Sbjct: 308 SDITP-AYSEPEPIQDFWSDPTLDQQLAAQQAAQQAAQQQAELAAQQ 353


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 EFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAK 257
           E  + SD  S+A  K+G+G  +A  T  E +  KK+ +   A  +  +  K
Sbjct: 459 EEERTSDSKSSA--KQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPK 507


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +3

Query: 120 SDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQA 278
           SD+   +V         ++   S + E  K  RP A  PK K+ +   +  +A
Sbjct: 326 SDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARA 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,521
Number of Sequences: 5004
Number of extensions: 20372
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)