Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P19
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 236 1e-63
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 235 2e-63
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.64
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 1.5
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 4.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.5
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 5.9
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 236 bits (577), Expect = 1e-63
Identities = 106/156 (67%), Positives = 127/156 (81%)
Frame = +1
Query: 10 DDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 189
D+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKML
Sbjct: 44 DEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKML 103
Query: 190 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQ 369
SCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q
Sbjct: 104 SCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQ 163
Query: 370 KIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKY 477
+I VSKKWGF++Y R+E+ + R G DGC K+
Sbjct: 164 RIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 235 bits (576), Expect = 2e-63
Identities = 106/156 (67%), Positives = 127/156 (81%)
Frame = +1
Query: 10 DDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKML 189
D+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKML
Sbjct: 44 DEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKML 103
Query: 190 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQ 369
SCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q
Sbjct: 104 SCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQ 163
Query: 370 KIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKY 477
+I VSKKWGF++Y R+E+ + R G DGC K+
Sbjct: 164 RIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.64
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +1
Query: 151 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 318
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 319 QVIEALRRAKFKFPGRQKIYVSK 387
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 1.5
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 275 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 105
P+RT + WG+ N IP+W + PA + I +T +R + +L +FFTR
Sbjct: 81 PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137
Query: 104 YL 99
L
Sbjct: 138 KL 139
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 4.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 254 VPWGFPNAPRIPV 216
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 124 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 228
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 291 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 193
RH G+S +++ C L + +T LE + S A
Sbjct: 94 RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 7.8
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 396 APLLRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPS 217
+PLL I L R + S ++ LN + + GLS+ H+RY + P R +
Sbjct: 92 SPLLSPISPLKLRFHKYSVSKQLNSV-------GKQGFGLSSNHSRYASPSSPARLARGA 144
Query: 216 L-EPISSS 196
L E +S+S
Sbjct: 145 LGEELSNS 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,786
Number of Sequences: 5004
Number of extensions: 40923
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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