Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P19
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 228 2e-60
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 28 3.1
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 28 3.1
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 28 4.0
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 28 4.0
M77697-7|AAA27902.6| 903|Caenorhabditis elegans Hypothetical pr... 27 5.3
L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical ... 27 5.3
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 27 7.0
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 27 7.0
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 27 7.0
AL110490-5|CAB54441.1| 424|Caenorhabditis elegans Hypothetical ... 27 9.3
AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 228 bits (557), Expect = 2e-60
Identities = 105/158 (66%), Positives = 124/158 (78%)
Frame = +1
Query: 1 ARGDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIN 180
A D FP CVH++S+E E LSSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RIN
Sbjct: 41 ANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRIN 100
Query: 181 KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFP 360
KMLSCAGADRLQTGMRGA+GKPQG VARV IG + S+R + IEA RRAKFKFP
Sbjct: 101 KMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFP 160
Query: 361 GRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVK 474
GRQ I S+KWGFTK++RE++E++R GR +DG V+
Sbjct: 161 GRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQ 198
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 30.7 bits (66), Expect = 0.57
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 245 GFPNAPRIPVWSLSAPA 195
GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical
protein F01G10.1 protein.
Length = 618
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 226 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 372
R GKP +A+ G+ I + + D W + + + K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +2
Query: 68 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 163
RRWK+ V +AT+TS R+ V+ +STS TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 258 YCALGFPERTT-HPSLEPISSSARQHFIDA 172
Y +LG + T HP+L +SS R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 258 YCALGFPERTT-HPSLEPISSSARQHFIDA 172
Y +LG + T HP+L +SS R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503
>M77697-7|AAA27902.6| 903|Caenorhabditis elegans Hypothetical
protein B0303.11 protein.
Length = 903
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -1
Query: 387 LRYIDLLATRELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEP 208
+R + LL+T ++ +S S + LC+PT L N + L PE + P+L
Sbjct: 344 IRCLLLLSTVQILVSAIGSYDILCIPTTVFYLFAYALFNFYVFLVKLSDPEIPSPPTLLS 403
Query: 207 ISSSA 193
++ SA
Sbjct: 404 LAISA 408
>L15313-8|AAA28196.1| 469|Caenorhabditis elegans Hypothetical
protein ZK353.8 protein.
Length = 469
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 280 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDA 441
PI S +S ++ E + RAK +++ KK K+ +EE K R+A
Sbjct: 155 PIQSSSTSQEMTRELAEKVARAKALLEQKKQKDAEKKREADKHVKEEMTKAREA 208
>AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical
protein F56C3.2 protein.
Length = 457
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 331 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFE 426
+ + AKF+FP + +S+ + Y++EEFE
Sbjct: 394 SFQEAKFQFPRIELHQISELFNLGTYQKEEFE 425
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 261 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 160
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 261 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 160
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 261 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 160
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>AL110490-5|CAB54441.1| 424|Caenorhabditis elegans Hypothetical
protein Y48B6A.5 protein.
Length = 424
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -1
Query: 279 LSNTHTRYCALGFPERTTHPSLEPISSSARQHFIDADDMEGV*SHPDVELIFTAVLYEVL 100
L++ +TRY + GF ++T EP S + HF D + V + + TAV +
Sbjct: 187 LTSVYTRYDSQGFYQQTESSGFEPRSPTI-THFSDVESEYMVDMEQEPLDVSTAVSFLPS 245
Query: 99 VATDT 85
+A T
Sbjct: 246 LAMQT 250
>AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical
protein Y46H3D.8 protein.
Length = 247
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 231 CVRETPRHSSACAYWTAHYVCT 296
C T SSACA W A+ CT
Sbjct: 206 CTSYTADSSSACASWAANGFCT 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,153
Number of Sequences: 27780
Number of extensions: 239342
Number of successful extensions: 632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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