Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P17
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    31   0.092
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   3.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.6  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   6.1  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 30.7 bits (66), Expect = 0.092
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 342 KQQLFSYAILGNSLSEAMGLLCL 410
           +  LFS AILG +L+EA GL CL
Sbjct: 42  RPHLFSMAILGFALTEATGLFCL 64


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 45  NAVCRKIDRPCSQDCYLQQHSSCATTRSS 131
           +A    + +PCSQ  +L++  SC T  S+
Sbjct: 377 SAYVASLPQPCSQKRHLEEDYSCLTEHSA 405


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 138  CRHCCEWSHKSCVAEDS 88
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 51  VCRKIDRPCSQDCYLQQHSSC 113
           VC K DRP   +     HSSC
Sbjct: 83  VCTKCDRPFLSEYIEDHHSSC 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,037
Number of Sequences: 5004
Number of extensions: 26968
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)