Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P17
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 46 1e-05
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 46 1e-05
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 46 1e-05
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 30 0.75
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 30 0.75
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 3.0
U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical pr... 27 5.3
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 5.3
AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally sym... 27 5.3
AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally sym... 27 5.3
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormo... 27 7.0
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 26 9.2
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 26 9.2
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 26 9.2
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 178 AVRTFQTTSVTKDLDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPS 336
A R TT KD+DSAAK+ FG+L+IGYARNPS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPS 58
Score = 43.2 bits (97), Expect = 8e-05
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 342 KQQLFSYAILGNSLSEAMGLLCL 410
KQQLFSYAILG +LSEAMGL CL
Sbjct: 60 KQQLFSYAILGFALSEAMGLFCL 82
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 178 AVRTFQTTSVTKDLDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPS 336
A R TT KD+DSAAK+ FG+L+IGYARNPS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPS 58
Score = 43.2 bits (97), Expect = 8e-05
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 342 KQQLFSYAILGNSLSEAMGLLCL 410
KQQLFSYAILG +LSEAMGL CL
Sbjct: 60 KQQLFSYAILGFALSEAMGLFCL 82
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/53 (41%), Positives = 26/53 (49%)
Frame = +1
Query: 178 AVRTFQTTSVTKDLDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPS 336
A R TT KD+DSAAK+ FG+L+IGYARNPS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPS 82
Score = 43.2 bits (97), Expect = 8e-05
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 342 KQQLFSYAILGNSLSEAMGLLCL 410
KQQLFSYAILG +LSEAMGL CL
Sbjct: 84 KQQLFSYAILGFALSEAMGLFCL 106
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.9 bits (64), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 138 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 13
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 138 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFCVLRGATTDN 13
C++C +HK VA+ S P CR + G+ VL TDN
Sbjct: 1092 CKNCHFKTHKDHVAQGSLPMCR--YNTGLSRELVLMAPQTDN 1131
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 3.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 144 CVCRHCCEWSHKSCV 100
C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -1
Query: 312 DEGTEYRSNTRSGSSYSNCRCASTNEFGSRVKVFGDRGGLEGAHS**LSRCNWNN-LCVC 136
++G E R+ + + A + S+ + ++G +E H CN + L +C
Sbjct: 222 EKGKEEARINRAAAKVDKRKAALESARASK-RARKEQGVVEENHQENCEVCNQDGELMLC 280
Query: 135 RHCCEWSHKSCVAEDSSPGCRGDQSC 58
C H +C+ E+ GD SC
Sbjct: 281 DTCTRAYHVACIDENMEQPPEGDWSC 306
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -1
Query: 312 DEGTEYRSNTRSGSSYSNCRCASTNEFGSRVKVFGDRGGLEGAHS**LSRCNWNN-LCVC 136
++G E R+ + + A + S+ + ++G +E H CN + L +C
Sbjct: 222 EKGKEEARINRAAAKVDKRKAALESARASK-RARKEQGVVEENHQENCEVCNQDGELMLC 280
Query: 135 RHCCEWSHKSCVAEDSSPGCRGDQSC 58
C H +C+ E+ GD SC
Sbjct: 281 DTCTRAYHVACIDENMEQPPEGDWSC 306
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = -1
Query: 312 DEGTEYRSNTRSGSSYSNCRCASTNEFGSRVKVFGDRGGLEGAHS**LSRCNWNN-LCVC 136
++G E R+ + + A + S+ + ++G +E H CN + L +C
Sbjct: 222 EKGKEEARINRAAAKVDKRKAALESARASK-RARKEQGVVEENHQENCEVCNQDGELMLC 280
Query: 135 RHCCEWSHKSCVAEDSSPGCRGDQSC 58
C H +C+ E+ GD SC
Sbjct: 281 DTCTRAYHVACIDENMEQPPEGDWSC 306
>U41996-5|AAA83474.1| 296|Caenorhabditis elegans Hypothetical
protein F38E1.6 protein.
Length = 296
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 83 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 175
G+L S +++ DH QC H++ + L L N+
Sbjct: 85 GILKSVEEII-DHELQCAHSYSYYILVLANF 114
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 165 RCNWNNLCVCRHCCEWSHKSC 103
RC N C H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439
>AC006642-9|AAX88828.1| 339|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform b protein.
Length = 339
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 3 TRLCCQSSHPSKHKNA------VCRKIDRPCSQDCYLQQHSSCATTRSS 131
TR+ C S H +H+N C K RP + + QH S T SS
Sbjct: 249 TRMDCVSHHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSS 297
>AC006642-8|AAF39827.2| 365|Caenorhabditis elegans Laterally
symmetric (defectivein lateral asymmetry) protein 2,
isoform a protein.
Length = 365
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 3 TRLCCQSSHPSKHKNA------VCRKIDRPCSQDCYLQQHSSCATTRSS 131
TR+ C S H +H+N C K RP + + QH S T SS
Sbjct: 275 TRMDCVSHHTLEHENHREGLEFFCEKCYRPFADEASYNQHMSYHTRVSS 323
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -1
Query: 288 NTRSGSSYSNCRCASTNEFGSRVKVFGDRG-GLEGAHS**LSRCNWNNLCVCRHCCEWSH 112
+ + G S C+ TN+ + G+RG G + + L N +N C R C
Sbjct: 1801 SAKCGESCPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVNNCSNKCAHRSCTLKCF 1860
Query: 111 KSCVAEDSSPGCRGDQSCGIQHFCV 37
+ C + + C CG H C+
Sbjct: 1861 EECNVKPCTEPCTDKLKCG--HACL 1883
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 9 LCCQSSHPSKHKNAVCRKIDRPCSQDCYLQQHSSCATT 122
+ C+ S + N VC P + C Q SSCA +
Sbjct: 1 MACKCSTSTNISNRVCSCSPLPSTSSCGCQASSSCANS 38
>AF106581-7|ABC48241.1| 362|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 135 protein.
Length = 362
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 141 VCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 46
+CR C + + ++ S+ CR D+SC I +
Sbjct: 24 ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 301 GSLIIGYARNPSPLNNSCSHMPSW 372
GS II Y RNP LNN S + SW
Sbjct: 290 GSQIIDYMRNPVDLNNIKS-LRSW 312
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 301 GSLIIGYARNPSPLNNSCSHMPSW 372
GS II Y RNP LNN S + SW
Sbjct: 2359 GSQIIDYMRNPVDLNNIKS-LRSW 2381
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 301 GSLIIGYARNPSPLNNSCSHMPSW 372
GS II Y RNP LNN S + SW
Sbjct: 1231 GSQIIDYMRNPVDLNNIKS-LRSW 1253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,153,237
Number of Sequences: 27780
Number of extensions: 169729
Number of successful extensions: 517
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -