Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P15
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 0.62
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 26 1.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 1.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 1.4
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 1.9
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 25 2.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 22 3.3
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 3.3
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 3.3
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 4.4
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 24 4.4
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 24 4.4
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 24 5.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 7.7
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 23 7.7
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.1 bits (57), Expect = 0.62
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 94 NSVYLEIFDECSFTMDELIAWAHISIPPAVLK 189
N + DE T+ E+I WAH + A+LK
Sbjct: 1505 NDTVQTLLDESVITIGEIIKWAHWNQYQAILK 1536
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 180 CWWYGYMRPRNQFIH-SK*TLIKYF 109
CW + MRP N+ I S +L KYF
Sbjct: 251 CWSFQAMRPHNELIRPSSTSLSKYF 275
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.2 bits (55), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 143 SSIVNEHSSNISKYTELTPGGNKQWITLFQRGVF---PPLGSV 24
SS + + N S E +PGGN+ L +RG+ PL S+
Sbjct: 33 SSSIRKKKVNFSSELENSPGGNRPSFGLPKRGILKTSTPLSSI 75
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 1.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 112 IFDECSFTMDELIAWAHISIPP 177
+F E S T+D L +W ++ PP
Sbjct: 444 LFSEVSRTLDSLASWHYVPPPP 465
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 164 ICAHAISSSIVNEHSSNISKYTELTPGGNKQWITLFQRGVF 42
IC ++I S + ++ SNI L P +K + LF R F
Sbjct: 125 ICRNSIKSILQFQNFSNIFAKKNLFPKVSKSDVLLFPRDAF 165
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 2.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 176 GGMDICAHAISSSIVNEHSSNISKYTELTPG 84
G + A A+ + EH+ N+SK T+L G
Sbjct: 68 GKTKVMAKALGHTPEEEHAENVSKLTKLLHG 98
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 22.2 bits (45), Expect(2) = 3.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 31 PSGGKTPRWNKVIHCLLPP 87
PSG TP ++ H LPP
Sbjct: 357 PSGSLTPLSSRPAHTSLPP 375
Score = 20.6 bits (41), Expect(2) = 3.3
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 157 AHISIPPAVLKGETHEDWYPLNGKQGDGMEGMINLVLSYTVGPAAA 294
AH S+PP T + P+N ++ +LS + P ++
Sbjct: 369 AHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISS 414
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 24.6 bits (51), Expect = 3.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 199 EFPPLKLLVVWIYAPTQSVHP**MNTHQIFPNIRS*HQVVIS 74
E PL + + T ++ P +NT I PN ++VIS
Sbjct: 301 EVDPLDAYMASLVGTTDTIRPGLLNTEVIDPNANDDERMVIS 342
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 3.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 104 YTELTPGGNKQWITLFQRGVFPPL 33
+ L G K W LF +G +PP+
Sbjct: 234 FATLPNGPTKVWDLLFPKGPYPPI 257
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 65 LSTAYYHLVLTPYIWKYLMS 124
LS +YY L+ Y W +++S
Sbjct: 45 LSASYYCLLYASYTWNFVLS 64
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 293 AAAGPTV*LSTRLIMPSIPSPCLPFN 216
+AA T + I+P +PSPC+ N
Sbjct: 608 SAASSTPSYNGERIVPDVPSPCISTN 633
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 148 IAWAHISIPPAVLKGETHEDW 210
I + ++PPA L +H+DW
Sbjct: 86 IEYIQSTLPPAYLASFSHDDW 106
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 67 IHCLLPPGVNSVYLEIFDECSFTMDELIAWAHISIPPAVLK 189
I CL ++ E+ +F++D+L+ A +S+ AV +
Sbjct: 3 ISCLSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYR 43
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +1
Query: 58 NKVIHCLLPPGVNSVYLEIFDECSFTMDELIAWAHISIPPAVL 186
NK I + +VYL++ E S +++ W + P L
Sbjct: 541 NKTIDGTIIKSTTNVYLKVNSETSLPTGDIVEWQNDITKPTKL 583
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.4 bits (48), Expect = 7.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 64 VIHCLLPPGVNSVYLEIFD 120
++H L+PPG S L +D
Sbjct: 37 LVHSLIPPGALSYLLSTYD 55
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 7.7
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +1
Query: 163 ISIPPAVLKGETHEDWYPLNGKQGD 237
I + P+ + + ++W PL+G G+
Sbjct: 186 IKLSPSFIVNKLTDEWVPLHGGSGE 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,330
Number of Sequences: 5004
Number of extensions: 32886
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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