Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P15
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.64 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   0.84 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.0  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   2.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.5  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    20   6.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   6.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 247  PPSHLPVYHSMDTNLHEFPPLKL 179
            P  H      +D+NLH + PLK+
Sbjct: 985  PFEHRHFISGIDSNLHVYAPLKI 1007


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 119 SNISKYTELTPGGNKQWITLFQRGVFP 39
           + +  +T +TP    QWI    R VFP
Sbjct: 427 AQLHNFTTMTPQEIAQWIDRRSRIVFP 453


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 230 CLPFNGYQSS*VSPFK 183
           CL +N YQSS  S F+
Sbjct: 8   CLRWNNYQSSITSAFE 23


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 230 CLPFNGYQSS*VSPFK 183
           CL +N YQSS  S F+
Sbjct: 8   CLRWNNYQSSITSAFE 23


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 247 PPSHLPVYHSMDTNLHEFPPL 185
           PP  L   H +D N +++PPL
Sbjct: 30  PPDML---HLIDANWYQYPPL 47


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  NSVYLEIFDECSFTMDELIAW 156
           N+ YL++ +  S   D++I W
Sbjct: 368 NAKYLDVIERNSGATDKIIRW 388


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  NSVYLEIFDECSFTMDELIAW 156
           N+ YL++ +  S   D++I W
Sbjct: 368 NAKYLDVIERNSGATDKIIRW 388


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 94  NSVYLEIFDECSFTMDELIAW 156
           N+ YL++ +  S   D++I W
Sbjct: 368 NAKYLDVIERNSGATDKIIRW 388


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 109 EIFDECSFTMDELIAWAHISIPPAVLKGETHEDWY 213
           E +D  S   D L     ++IPP++ +   HE+ Y
Sbjct: 41  ESYDASSSNSDSL----SMTIPPSIDRSSIHEESY 71


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 223 HSMDTNLHEFPPL 185
           H +D N +++PPL
Sbjct: 1   HLIDANWYQYPPL 13


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 51  ALE*SYPLLITTWC 92
           AL  +YP L+  WC
Sbjct: 475 ALTGTYPTLLPQWC 488


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 184 LKGETHEDWYPLNGKQGDGMEGMIN 258
           L+GE    +YPL G   +  + +I+
Sbjct: 142 LEGELKGTFYPLTGMSKETQQKLID 166


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -2

Query: 155 HAISSSIVNEHSSNISKYT 99
           HA    +  EH + + +YT
Sbjct: 405 HAFVDDVFQEHKNTLPQYT 423


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 184 LKGETHEDWYPLNGKQGDGMEGMIN 258
           L+GE    +YPL G   +  + +I+
Sbjct: 158 LEGELKGTFYPLTGMSKETQQKLID 182


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 193 ETHEDWYPLNGKQGDGMEGMINL 261
           ETH DW P + +  +   G + L
Sbjct: 194 ETHIDWQPEDEECTEATAGAVVL 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,700
Number of Sequences: 438
Number of extensions: 2453
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)