Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P14
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 299 2e-82
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 148 6e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 143 2e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 94 1e-20
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.3
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 4.0
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 4.0
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 5.3
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.3
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 299 bits (734), Expect = 2e-82
Identities = 133/173 (76%), Positives = 157/173 (90%)
Frame = +1
Query: 10 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 189
RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPELTQQMFDA NMM
Sbjct: 241 RFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300
Query: 190 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 369
A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+
Sbjct: 301 VAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKD 360
Query: 370 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTREGMDEMEFTEAES 528
LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYT EGMDEMEFTEAES
Sbjct: 361 LKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAES 413
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 148 bits (358), Expect = 6e-37
Identities = 66/179 (36%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Frame = +1
Query: 10 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 189
RF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T Q F+ N M
Sbjct: 243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
Query: 190 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRG 369
CDPR GRY+ ++RG + ++V + I+ K + FV+W P K +CD PP+
Sbjct: 303 VKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQH 362
Query: 370 LK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTREGMDEMEFTEA 522
++ A + N+T+I E + R+ +F M+ ++AF+HWY EGM+E EF+EA
Sbjct: 363 IEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEA 421
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 143 bits (346), Expect = 2e-35
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Frame = +1
Query: 10 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 189
RF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T Q F+ N M
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
Query: 190 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR- 366
CDPR GRY+ ++RG + ++V + +I+++ + FV+W P K +C PP+
Sbjct: 307 VKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQH 366
Query: 367 -------GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTREGMDEMEFTEA 522
+ A + N+T+I E + R+ +F M+ ++AF+HWY EGM+E EF+EA
Sbjct: 367 VPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEA 425
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 94.3 bits (224), Expect = 1e-20
Identities = 47/180 (26%), Positives = 98/180 (54%), Gaps = 7/180 (3%)
Frame = +1
Query: 10 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPELTQQMFDAK 180
R+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV ++ +++ K
Sbjct: 244 RYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPK 303
Query: 181 NMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDI 357
N M + +P + ++++ I +G +V + +L I+ + + F+ W P +++ A+
Sbjct: 304 NQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKK 363
Query: 358 PP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTREGMDEMEFTEAES 528
P +++ + N T+I LFKR +Q+ + +R AFL Y +E + E + E +S
Sbjct: 364 SPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDS 423
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 235 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 408
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 409 IQELFK 426
+EL++
Sbjct: 403 KEELYE 408
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 391 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTREGM 498
+ N + L+K + E+F+ +F RK L WY R G+
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGV 1737
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 214 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 339
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 84 EMQTWEWHHVHCQLAEIRIQLTREPASC 1
++Q E HH + + A +R+QL+R +C
Sbjct: 94 KLQDSEIHHRYSEFASLRVQLSRLYPTC 121
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 214 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 330
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 274 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 396
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,070
Number of Sequences: 5004
Number of extensions: 36126
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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