Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P13
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    44   6e-06
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    31   0.048
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   1.0  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   1.4  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   1.8  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   9.6  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    23   9.6  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 44.0 bits (99), Expect = 6e-06
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +2

Query: 212 ATSDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTHRET 334
           A++ I I +GNSHPELA+ +A+R+G+  G  +V   ++RET
Sbjct: 2   ASNSIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRET 42


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 31.1 bits (67), Expect = 0.048
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 230 ILSGNSHPELADLIAKRLGVRKGGCSVYHKTHRET 334
           I+ G SHPEL  LI+ RLG+     S+    + ET
Sbjct: 6   IIGGGSHPELLHLISNRLGITPCDVSLKRFANGET 40


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 309 TEHPPLRTPSRLAIKSANSGCELPLSITMSDVAFP 205
           +EH    TPS   +K  N   ELP S+T  +   P
Sbjct: 562 SEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTP 596


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 221 DIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTHRE 331
           D++ L  N HP    +   R G  +G C VY +T ++
Sbjct: 100 DVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQD 136


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 179 NRSRKSNMEGNATSDIVIL---SGNSHPELADLIAK 277
           NR    + + N+  D  I+   SGNS PEL DL+ K
Sbjct: 572 NRYGVLHSKSNSVKDAYIIPMPSGNSVPELLDLLPK 607


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 96  LTNKCFIFYVIYIFSYKLKDLYNCS 22
           L  KCF FY+ Y+  Y+L+D +  S
Sbjct: 914 LAVKCFEFYLSYV--YQLEDSFKKS 936


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 224 CPTLHSPPYCSYEIYYWNL 168
           C  L  P Y  Y +Y+ N+
Sbjct: 81  CEELRDPKYAEYHLYFTNV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,016
Number of Sequences: 5004
Number of extensions: 25478
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)