Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_P10
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 33 0.14
02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864... 32 0.25
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 30 0.99
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 30 1.3
08_01_0674 + 5835592-5835649,5835750-5835856,5835953-5836019,583... 29 3.0
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 29 3.0
07_03_0698 - 20765305-20768526 28 4.0
11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467 28 5.3
07_03_0976 + 23061633-23061686,23062783-23063564,23065468-230657... 28 5.3
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 28 5.3
11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120 27 7.0
03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061... 27 7.0
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 27 7.0
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563... 27 9.2
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 27 9.2
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 27 9.2
01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282 27 9.2
01_01_0242 + 1997427-1997429,1997893-1998580,2000199-2000234,200... 27 9.2
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 448 HKIGEGVYGEVFLWRDRDGRARVMKI 525
HKIG+G YG+V+ RDGR V+K+
Sbjct: 401 HKIGQGNYGDVYKGNLRDGRQIVVKL 426
>02_02_0293 -
8639826-8639852,8640161-8640361,8641165-8641611,
8641726-8641816,8642949-8643949
Length = 588
Score = 32.3 bits (70), Expect = 0.25
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 286 KLSIADAEPDVTVLEVQNTSNRLATAKDYVLRRCNQTDAILFDECYPDTVLKNCHKIGEG 465
K SI D EP++T++E ++ A + + V + A + YP C +G G
Sbjct: 431 KCSIPDIEPNLTMVERVTFASTAAASMELVANKNTTRIAYINTPDYPKVTHAKCSTLGLG 490
Query: 466 VYGEVF 483
V G +
Sbjct: 491 VKGGAY 496
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 347 FEVFCTSKTVTSGSASAIDSFDKSTIVSSQSSL-KNPLYCRER 222
F V+ +T+TSGS SA + ++S + + +L KNP++ R
Sbjct: 17 FAVYIPPQTITSGSRSAPCASERSAVDPAVKTLAKNPMFANNR 59
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 406 LFDECYPDTVLKN-CHKIGEGVYGEVFLWRDRDGRARV 516
+F E D++ K C KIG+G +GEV++ +D + V
Sbjct: 397 IFTEKELDSITKGKCTKIGQGAFGEVYMGTYKDQQVAV 434
>08_01_0674 +
5835592-5835649,5835750-5835856,5835953-5836019,
5836244-5836481,5836570-5836720,5836829-5837173
Length = 321
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 448 HKIGEGVYGEVFLWRDRDGRARVMKI 525
+KIGEG +G VF R RDG +K+
Sbjct: 43 NKIGEGGFGSVFRGRLRDGTIVAVKV 68
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 448 HKIGEGVYGEVFLWRDRDGRARVMK 522
+K+GEG YG VF R +DGR +K
Sbjct: 339 YKLGEGGYGVVFKGRLQDGRLVAVK 363
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Frame = +3
Query: 267 YDCRFIKTIYC*CGTRC----HC---FRSTEYFEPFSDSQGLRVASMQSNRRDTF**MLS 425
YD R +K I C T+C C F Y+ P + L+V + + T
Sbjct: 521 YDDRHLKGILCNILTQCCPDVFCMKMFLHALYYNPETTEHQLQVLNTSLGKEYTDHGRQD 580
Query: 426 R---YCAEKLPQDWGRCLWRS 479
R +C + LP ++ CLW S
Sbjct: 581 RIMAFCYQALPNNYKNCLWYS 601
>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
Length = 976
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 265 DTIVDLSKLSIADAEPDVTVLEVQNTSNRLATAKDYVLRRCNQTDAI 405
D ++DL LS+++ E VT+L+ + ++ L+ A LR CN I
Sbjct: 515 DMVLDLI-LSLSNEENFVTILDQERGASSLSKAHRISLRDCNVVHTI 560
>07_03_0976 +
23061633-23061686,23062783-23063564,23065468-23065717,
23065808-23065984
Length = 420
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = -2
Query: 273 NRIITIVAQK--SSVLQGKMHAL-----GFKHFCNKDVEKCYYPV 160
+R+I + AQ+ + L G AL GF FCN E C++P+
Sbjct: 246 SRLIMLTAQRFVQTFLGGNYIALHFRRHGFLKFCNVKKESCFFPI 290
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +1
Query: 139 SLTAIIRNGIIAFFNVFVTKVFKAKCMHLSLQYRGFLSDDCDDT-IVDLSKLSIADAEPD 315
S +++ G F ++F A + FL+ DD I+ LSKLSI D E +
Sbjct: 1332 STLRVLKGGHNNFHGALPDELFNASSLEYLSFPDNFLNGVLDDANIIKLSKLSILDLEQN 1391
Query: 316 VTVLEVQNTSNRLATAKD 369
+ ++ + +L K+
Sbjct: 1392 MFSGKIPKSIGQLKRLKE 1409
>11_06_0649 + 25882657-25882782,25882983-25883175,25883354-25884120
Length = 361
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 451 KIGEGVYGEVFLWRDRDGRARVMK 522
KIGEG +G V++ R DGR +K
Sbjct: 75 KIGEGGFGSVYMGRLPDGRVVAIK 98
>03_05_0885 -
28505628-28505767,28505892-28505970,28506048-28506163,
28506588-28506654,28507361-28507456,28508729-28508838,
28508983-28509070,28510109-28510183,28510401-28510445,
28510521-28510595,28511392-28511763
Length = 420
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 451 KIGEGVYGEVFLWRD-RDGRARVMKI 525
KIG G YG+V L+R +DG+ +K+
Sbjct: 140 KIGSGSYGKVVLYRSMKDGKLYAVKV 165
>02_04_0277 -
21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 454 IGEGVYGEVFLWRDRDGRARVMK 522
IGEG YG V+ DGRA V+K
Sbjct: 49 IGEGSYGRVYNGTLSDGRAAVIK 71
>12_02_1075 -
25854662-25855015,25855895-25856045,25856141-25856378,
25856494-25856704,25856973-25857088,25857844-25857877,
25857996-25858253
Length = 453
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 448 HKIGEGVYGEVFLWRDRDGRARVMKI 525
HK+G+G +G V+L + R+G+ +K+
Sbjct: 124 HKLGQGSFGCVYLGKLRNGQKVAIKV 149
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 442 NCHKIGEGV-YGEVFLWRDRDGR-ARVMK 522
NC + G G VF+WR +DG RVMK
Sbjct: 374 NCDYVTTGSDCGRVFIWRKKDGELMRVMK 402
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 223 LSLQYRGFLSDDCDDTIVDLSKLSIADAEPDVTVLEVQNTSNRLATAKDYVLR 381
+ L++ FL +D T L+K+ + A+PD + L+V+N D +LR
Sbjct: 63 MELEFGRFLGEDPKLT---LAKILLKKADPDASSLDVENLIANKKAKLDDILR 112
>01_01_0982 + 7770960-7771800,7771829-7772113,7773194-7773282
Length = 404
Score = 27.1 bits (57), Expect = 9.2
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 262 DDTIVDLSK---LSIADAEPDVTVLEVQNTSNRLATAKDYVLRRCNQTDAILFDECYPDT 432
DDT++ LS+A A P V VL V S R++ A+ RC + D
Sbjct: 18 DDTVLPQGADVALSLA-APPRVAVLSV---SRRVSPAEVDPCARCKSPFVLALDPSAGLV 73
Query: 433 VLKNCHKIGEGVYGEVFLWRDRDGRARVMKI 525
+L G++ W DRDG R ++
Sbjct: 74 LLVAPPPPSPDDSGDLRSWTDRDGNERTFRV 104
>01_01_0242 +
1997427-1997429,1997893-1998580,2000199-2000234,
2000786-2001114,2001178-2001855
Length = 577
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 448 HKIGEGVYGEVFLWRDRDGRARVMK 522
+K+GEG YG VF + +DGR +K
Sbjct: 313 NKLGEGGYGVVFKGKLQDGRLVAVK 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,779
Number of Sequences: 37544
Number of extensions: 248904
Number of successful extensions: 815
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -