Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P10
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69787-4|CAA93639.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U58743-1|AAB00613.1|  298|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center...    28   3.6  
Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z98261-1|CAB10931.1|  920|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z71266-11|CAA95847.1|  920|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z71258-16|CAA95786.1|  920|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical...    27   8.2  
AF408763-1|AAO27842.1|  459|Caenorhabditis elegans unknown prote...    27   8.2  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z69787-4|CAA93639.1|  305|Caenorhabditis elegans Hypothetical
           protein C44C10.5 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 424 DNIHQKVSRLFDCIDATRNPWLSLNGSKY 338
           + +   +  L + I ATRN W+++NG++Y
Sbjct: 196 ETVKMHLRTLEETIQATRNEWVAVNGAEY 224


>U58743-1|AAB00613.1|  298|Caenorhabditis elegans Hypothetical
           protein F39F10.3 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 454 IGEGVYGEVFLWR-DRDGRARVMKI 525
           +G+G+YGEV L + DR+  ARV K+
Sbjct: 16  LGKGMYGEVHLCKDDRNNEARVAKL 40


>U53153-3|AAC69038.1|  653|Caenorhabditis elegans Germinal center
           kinase family protein1, isoform a protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 397 DAILFDECYPDTVLKNCHKIGEGVYGEVFLWRD-RDGRARVMKI 525
           D I   +  P+ +     +IG G +GEV+   D R GR   +KI
Sbjct: 21  DRIYIQKLDPEVIFTKQERIGRGSFGEVYKGIDNRTGRVVAIKI 64


>Z81492-1|CAB04025.2|  326|Caenorhabditis elegans Hypothetical
           protein E03H4.2 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -3

Query: 308 SASAIDSFDKSTIVSSQSSLKNPLYCRERCMHLALNTFVTKTLKNAIIPLRIMAVNEISF 129
           + S ++   KS+I     + K      E   H+A++ F    L  ++I +  + + +  F
Sbjct: 189 AVSGVNGVQKSSIYKEYDNYKT-----EATEHIAVDYFFKYILNKSLIDILWIDIEQNEF 243

Query: 128 VYMHKLHLN 102
             M +LH+N
Sbjct: 244 PIMEQLHVN 252


>Z78198-3|CAB01569.1| 1010|Caenorhabditis elegans Hypothetical
           protein F55C5.4 protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -1

Query: 418 IHQKVSRLFDCIDATRNPWLSLNGSKYSVLLKQ*HRVPHQQ*IVLINRQSYHHNRRSKIL 239
           IH     +FD  D+  N  ++L G+K S   ++    P    I+ +NR  Y     S   
Sbjct: 545 IHFNPDSVFDSFDSGLNVLVNLYGTKQSKKKRRELEDPEDVLIMTLNRLKYLLQSHSTSN 604

Query: 238 CIAGKD 221
            IA KD
Sbjct: 605 LIAMKD 610


>U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical
           protein F22F1.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 451 KIGEGVYGEVFLWRD-RDGRARVMKI 525
           K+GEG YG+V+  RD R+ +  V+K+
Sbjct: 16  KLGEGSYGDVYFCRDERNNKWSVIKL 41


>Z98261-1|CAB10931.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 451 KIGEGVYGEVF--LWRDRDGRARVMKI 525
           K+GEG YGEVF  +W   DG+   +KI
Sbjct: 593 KLGEGAYGEVFSTIW---DGKPVAIKI 616


>Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical
           protein F09C3.2 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +1

Query: 265 DTIVDLSKLSIADAEPDVTVLEVQNTSNRLATAKDYVLRRCNQTDAILFDECYPDT 432
           DTI DL    IA     V V+    T + LA   DY L   ++   ++      DT
Sbjct: 192 DTIADLKMGKIAGLRASVAVMTGVGTRDTLAQYSDYFLEDISELPHLITKTMTEDT 247


>Z71266-11|CAA95847.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 451 KIGEGVYGEVF--LWRDRDGRARVMKI 525
           K+GEG YGEVF  +W   DG+   +KI
Sbjct: 593 KLGEGAYGEVFSTIW---DGKPVAIKI 616


>Z71258-16|CAA95786.1|  920|Caenorhabditis elegans Hypothetical
           protein C01H6.9 protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 451 KIGEGVYGEVF--LWRDRDGRARVMKI 525
           K+GEG YGEVF  +W   DG+   +KI
Sbjct: 593 KLGEGAYGEVFSTIW---DGKPVAIKI 616


>AL032637-17|CAD60427.1|  294|Caenorhabditis elegans Hypothetical
           protein Y43F8C.19 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 197 FVTKTLKNAI-IPLRIMAVNEISFVYMHKLHLNV 99
           F+  T+KN I +   ++AVN  + ++M K H ++
Sbjct: 93  FLQTTIKNTIFLGYTVVAVNRFTIIFMQKYHNHI 126


>AF408763-1|AAO27842.1|  459|Caenorhabditis elegans unknown protein
           protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 451 KIGEGVYGEVF--LWRDRDGRARVMKI 525
           K+GEG YGEVF  +W   DG+   +KI
Sbjct: 301 KLGEGAYGEVFSTIW---DGKPVAIKI 324


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 451 KIGEGVYGEVF--LWRDRDGRARVM 519
           K+GEG YGEVF  +W  R    +V+
Sbjct: 110 KLGEGAYGEVFSTVWNGRPVAIKVL 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,027
Number of Sequences: 27780
Number of extensions: 250204
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)