Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P10
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    27   0.12 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   3.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.7  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -3

Query: 320 VTSGSASAIDSFDKSTIVSSQSSLKNPLYCRERCMHLALNTFVTKTLKNAIIPLRIMAVN 141
           + S    AID FD+  ++ S       L C  + +   LNT  +K LK   IP  I AVN
Sbjct: 125 IVSAYKIAIDKFDRLWVLDSGLINNIQLMCSPKLLAFDLNT--SKLLKQIEIPHNI-AVN 181


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -1

Query: 421 NIHQKVSRLFDCI 383
           N+H K++++F CI
Sbjct: 111 NVHLKITKIFQCI 123


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 230 RERCMHLALNTFVTK-TLKNAIIPLRIMAVNEI 135
           RER +H A N FVT     + ++ L +M  + I
Sbjct: 72  RERYLHTATNYFVTSLAFADCLVGLVVMPFSAI 104


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 421 NIHQKVSRLFDC 386
           N+H K+S++F C
Sbjct: 111 NVHIKISKIFQC 122


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 427 LDNIHQKVSRLFDCIDATRNP 365
           L+N+ Q +SR+ D  D    P
Sbjct: 34  LENVTQTISRILDGYDIRLRP 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,882
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)