Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P09
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical p...    30   0.97 
U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical p...    30   1.3  
U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine rece...    27   6.9  

>U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical
           protein T22F3.8 protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 143 YYNLTAVILFNLYIENHLYEILNF 214
           +++LTA I+F+ YI  +L+E+L F
Sbjct: 287 FFDLTAAIMFSTYIPLYLHEVLKF 310


>U64844-10|AAB18310.1|  448|Caenorhabditis elegans Hypothetical
           protein T22F3.7 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 143 YYNLTAVILFNLYIENHLYEILNF 214
           ++ LTA I+F+ YI  +L+E+L F
Sbjct: 287 FFELTAAIMFSTYIPLYLHEVLKF 310


>U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine
           receptor, class x protein115 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 362 FNSHHHVPWTSLLL 403
           FN  H VPWT++LL
Sbjct: 112 FNKQHRVPWTNILL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,737,268
Number of Sequences: 27780
Number of extensions: 182347
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)