Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P08
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   124   5e-30
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   122   2e-29
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   0.94 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   1.5  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   1.9  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    24   7.8  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  124 bits (298), Expect = 5e-30
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
 Frame = +3

Query: 27  MAKRTKNVGITGKYGTRFGASLLKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 200
           M KRTK VG+TGKYG R+GASL + V+K+EV QH++Y C FCG++ +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGK 60

Query: 201 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 293
            CK+ +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCKKVLAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  122 bits (294), Expect = 2e-29
 Identities = 53/91 (58%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
 Frame = +3

Query: 27  MAKRTKNVGITGKYGTRFGASLLKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--K 200
           M KRTK VG+TGKYG R+GASL + V+K+EV QH++Y C FCG+  +KR+  GIW C  K
Sbjct: 1   MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGK 60

Query: 201 RCKRTVAGGAWVFSTTAASSCRSAVRRLREV 293
            C +T+AGGAW  +T AA+S RS +RRLRE+
Sbjct: 61  GCSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect(2) = 0.94
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 214 VLLHRLHDQMPTHERFMASLPQNEQV 137
           +L  +L +Q+PT  R  AS+P   QV
Sbjct: 32  LLKQKLTEQLPTTFRITASIPHATQV 57



 Score = 21.0 bits (42), Expect(2) = 0.94
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 109 FLTILSKDAPKRVPYLPVIPTFLV 38
           F+  +SK+  ++ P+L  +  FLV
Sbjct: 94  FMLDISKEVIRKSPHLKALQEFLV 117


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 123 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 212
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 132 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 221
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 112 IFLTILSKDAPKRVPYLPVIPTFLVRL 32
           I L I S   P    Y+P++P  L RL
Sbjct: 253 IMLEICSSQLPFVEQYMPILPLLLERL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,649
Number of Sequences: 5004
Number of extensions: 22093
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)