Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P08
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   140   2e-34
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    30   0.52 
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    27   4.9  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    26   6.4  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  140 bits (339), Expect = 2e-34
 Identities = 59/90 (65%), Positives = 74/90 (82%)
 Frame = +3

Query: 27  MAKRTKNVGITGKYGTRFGASLLKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 206
           MAKRTK VGI GKYGTR+GASL KM KK+EV QH++YTCSFCGK+AMKR   GIW+C +C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60

Query: 207 KRTVAGGAWVFSTTAASSCRSAVRRLREVK 296
            + VAGGA+V+ T  A++ RS +RRLR++K
Sbjct: 61  HKVVAGGAYVYGTVTAATVRSTIRRLRDLK 90


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 180 HMNVSWHPCRRMSKCISRVELLPSF*PF*VKMHR 79
           ++N   +  RR SKC  RVEL PS+  F +  +R
Sbjct: 261 YVNAKIYASRRNSKCFRRVELFPSYIRFYLASNR 294


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 186 CLHMNVSWHPCR--RMSKCIS 130
           CLH   S HPCR  RM KCI+
Sbjct: 42  CLHRLPSSHPCRHCRMEKCIA 62


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 123 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 206
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 168 SWHPCRRMSKCISRVELLPSF 106
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 168 SWHPCRRMSKCISRVELLPSF 106
           +W+P  + S C+S+ +L P+F
Sbjct: 736 TWYPIDKASPCVSKEDLSPAF 756


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 168 KRSCVGIWSCKRCKRTVAGGAWVFSTT 248
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 168 KRSCVGIWSCKRCKRTVAGGAWVFSTT 248
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical
           protein C49A1.9 protein.
          Length = 578

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 75  RFGASLLKMVKKMEVTQHAKYTCSFCGK-DAMKRSCVGIWSCKRCKRTV-AGGAWVFSTT 248
           R  ++ LK+  KME T +   TCS     + MK S     S      TV +   W+F+TT
Sbjct: 95  RESSTELKIAVKMEFTAN---TCSKTATANTMKNSVATDTSYLEYTMTVNSESQWIFTTT 151

Query: 249 AASSCRSAVRRLREVK 296
              +C    R  +  K
Sbjct: 152 ITLNCPVGYRLFKRPK 167


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 150 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 269
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 20  TKNGQTHQECRNYW*IWHTFRC 85
           T+NG THQ C +    WH   C
Sbjct: 119 TENGDTHQLCEHTNDAWHGASC 140


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 138  TCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 263
            TC  CG++  KR C+ +     C     G A   S  A+S C
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCAC----TGNATDTSVCASSVC 1156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,965,871
Number of Sequences: 27780
Number of extensions: 136158
Number of successful extensions: 402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)