Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P08
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    27   0.048
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   9.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 0.048
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 109 FLTILSKDAPKRVPYLPVIP 50
           FL ++S   P  VPY PVIP
Sbjct: 639 FLVVISSSNPLNVPYGPVIP 658


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 94  SKDAPKRVPYLPVIPTFLV 38
           +  A  R+P LP+IP + V
Sbjct: 778 NSQAIPRIPILPMIPVYCV 796


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 69  GTRFGASLLKMVKKMEVTQHAKYTCSFCGK 158
           G  F  S    V     T    YTC  CGK
Sbjct: 210 GKGFTCSKQLKVHTRTHTGEKPYTCDICGK 239


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 159 PCRRMSKCISRVEL 118
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 159 PCRRMSKCISRVEL 118
           PCR  ++CI+R+ L
Sbjct: 478 PCRCHARCIARLAL 491


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 112 IFLTILSKDAPKRVPYLPVIPTFLV 38
           +FL ++SK  P     LP+I  +L+
Sbjct: 277 VFLLLVSKILPPTSLVLPLIAKYLL 301


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 135 YTCSFCGK 158
           YTC  CGK
Sbjct: 372 YTCDVCGK 379


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 126 HAKYTCSFCG 155
           H +YTC  CG
Sbjct: 480 HDEYTCMDCG 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,474
Number of Sequences: 438
Number of extensions: 1701
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)