Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P07
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   4.7  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   4.7  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   6.2  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 364 GVSGLIEVENPNRVVKNNKKLSNLDNAGQGQQPQ 465
           G S  + +E P     +NK+ +NLD+    ++P+
Sbjct: 20  GESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPK 53


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 157 KSQGRNRKFTSPEELEEQRKHDEQKKKWKTGGQKDHG 267
           K+  R R  T+P + E      E+ +     G+ DHG
Sbjct: 100 KAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHG 136


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 346 HPTKAKGVSGLIEVENPNRVVKNNKKLSNL 435
           HP K K  S L   E+P  + K+N++   L
Sbjct: 60  HPDKMKNASQLAPTESPPEINKHNEEYFRL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,607
Number of Sequences: 5004
Number of extensions: 29545
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)