Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_P07
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    47   1e-05
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    46   2e-05

>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/74 (39%), Positives = 35/74 (47%)
 Frame = +1

Query: 355 KAKGVSGLIEVENPNRVVKNNKKLSNLDNAGQGQQPQLSXXXXXXXXXXXXXXXXXXLHA 534
           K KG  GLIE+ENPN V   N K  ++D    G+   LS                  L  
Sbjct: 72  KHKGTEGLIEIENPNLVKPKNIKAKDID---IGRTSDLSRREREELEKQKSHERHMKLQE 128

Query: 535 EGKTDQARADLARL 576
           +GKT+QAR DL RL
Sbjct: 129 QGKTEQARKDLERL 142


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 28/74 (37%), Positives = 35/74 (47%)
 Frame = +1

Query: 355 KAKGVSGLIEVENPNRVVKNNKKLSNLDNAGQGQQPQLSXXXXXXXXXXXXXXXXXXLHA 534
           K KG  GLI++ENPN V   N K   +D    G+  +LS                  L  
Sbjct: 66  KHKGTEGLIQIENPNLVKAKNIKAKEVD---LGKTTELSRREREEIEKQKAHERYMKLQE 122

Query: 535 EGKTDQARADLARL 576
           +GKT+QAR DL RL
Sbjct: 123 QGKTEQARKDLERL 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,168
Number of Sequences: 37544
Number of extensions: 182134
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)